Experiment: Ying_Nucleobase14 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1754 and GFF1755 are separated by 15 nucleotides GFF1755 and GFF1756 overlap by 4 nucleotides GFF1756 and GFF1757 are separated by 86 nucleotides GFF1757 and GFF1758 overlap by 4 nucleotides
GFF1754 - Phenazine biosynthesis protein PhzF like, at 617,652 to 618,506
GFF1754
GFF1755 - FIG00454405: hypothetical protein, at 618,522 to 619,217
GFF1755
GFF1756 - Threonine dehydratase (EC 4.3.1.19), at 619,214 to 620,182
GFF1756
GFF1757 - response regulator in two-component regulatory system with PhoQ, at 620,269 to 620,976
GFF1757
GFF1758 - periplasmic sensor signal transduction histidine kinase, at 620,973 to 622,346
GFF1758
Position (kb) 619
620
621 Strain fitness (log2 ratio) -2
-1
0
1 at 618.381 kb on + strand, within GFF1754 at 618.381 kb on + strand, within GFF1754 at 618.381 kb on + strand, within GFF1754 at 618.382 kb on - strand, within GFF1754 at 618.699 kb on + strand, within GFF1755 at 618.699 kb on + strand, within GFF1755 at 618.699 kb on + strand, within GFF1755 at 618.699 kb on + strand, within GFF1755 at 618.699 kb on + strand, within GFF1755 at 618.700 kb on - strand, within GFF1755 at 619.269 kb on - strand at 619.269 kb on - strand at 619.397 kb on + strand, within GFF1756 at 619.398 kb on - strand, within GFF1756 at 619.398 kb on - strand, within GFF1756 at 619.398 kb on - strand, within GFF1756 at 619.398 kb on - strand, within GFF1756 at 619.398 kb on - strand, within GFF1756 at 619.398 kb on - strand, within GFF1756 at 619.697 kb on + strand, within GFF1756 at 619.697 kb on + strand, within GFF1756 at 619.697 kb on + strand, within GFF1756 at 619.697 kb on + strand, within GFF1756 at 619.697 kb on + strand, within GFF1756 at 619.698 kb on + strand, within GFF1756 at 619.698 kb on - strand, within GFF1756 at 619.698 kb on - strand, within GFF1756 at 619.698 kb on - strand, within GFF1756 at 619.698 kb on - strand, within GFF1756 at 619.698 kb on - strand, within GFF1756 at 619.742 kb on + strand, within GFF1756 at 619.742 kb on + strand, within GFF1756 at 619.743 kb on - strand, within GFF1756 at 619.850 kb on + strand, within GFF1756 at 619.850 kb on + strand, within GFF1756 at 620.329 kb on + strand at 620.329 kb on + strand at 620.329 kb on + strand at 620.329 kb on + strand at 620.330 kb on - strand at 620.331 kb on + strand at 620.331 kb on + strand at 620.332 kb on - strand at 620.332 kb on - strand at 620.581 kb on + strand, within GFF1757 at 620.581 kb on + strand, within GFF1757 at 620.581 kb on + strand, within GFF1757 at 620.582 kb on - strand, within GFF1757 at 620.582 kb on - strand, within GFF1757 at 620.770 kb on + strand, within GFF1757 at 620.770 kb on + strand, within GFF1757 at 620.771 kb on - strand, within GFF1757 at 620.771 kb on - strand, within GFF1757 at 620.833 kb on + strand, within GFF1757 at 620.834 kb on - strand, within GFF1757 at 620.834 kb on - strand, within GFF1757 at 620.834 kb on - strand, within GFF1757 at 621.027 kb on + strand at 621.028 kb on - strand at 621.028 kb on - strand at 621.028 kb on - strand at 621.028 kb on - strand at 621.030 kb on + strand at 621.031 kb on - strand at 621.078 kb on + strand at 621.078 kb on + strand at 621.079 kb on - strand at 621.079 kb on - strand at 621.079 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1 remove 618,381 + GFF1754 0.85 -0.3 618,381 + GFF1754 0.85 +0.6 618,381 + GFF1754 0.85 +0.1 618,382 - GFF1754 0.85 +0.0 618,699 + GFF1755 0.25 -0.1 618,699 + GFF1755 0.25 +0.8 618,699 + GFF1755 0.25 +0.2 618,699 + GFF1755 0.25 +0.0 618,699 + GFF1755 0.25 +0.4 618,700 - GFF1755 0.26 -0.4 619,269 - -0.2 619,269 - +0.4 619,397 + GFF1756 0.19 +0.3 619,398 - GFF1756 0.19 -0.1 619,398 - GFF1756 0.19 -0.1 619,398 - GFF1756 0.19 -0.1 619,398 - GFF1756 0.19 -0.3 619,398 - GFF1756 0.19 +0.2 619,398 - GFF1756 0.19 +0.4 619,697 + GFF1756 0.50 +0.8 619,697 + GFF1756 0.50 +0.6 619,697 + GFF1756 0.50 +0.6 619,697 + GFF1756 0.50 +1.1 619,697 + GFF1756 0.50 -2.0 619,698 + GFF1756 0.50 +0.7 619,698 - GFF1756 0.50 -0.0 619,698 - GFF1756 0.50 +0.5 619,698 - GFF1756 0.50 -1.2 619,698 - GFF1756 0.50 +0.3 619,698 - GFF1756 0.50 +0.2 619,742 + GFF1756 0.54 +0.7 619,742 + GFF1756 0.54 +0.1 619,743 - GFF1756 0.55 +0.1 619,850 + GFF1756 0.66 +1.1 619,850 + GFF1756 0.66 +0.8 620,329 + +0.6 620,329 + +1.0 620,329 + +0.0 620,329 + +1.0 620,330 - +0.5 620,331 + +1.2 620,331 + +0.0 620,332 - +0.2 620,332 - -0.0 620,581 + GFF1757 0.44 +1.3 620,581 + GFF1757 0.44 +0.4 620,581 + GFF1757 0.44 +0.4 620,582 - GFF1757 0.44 -0.8 620,582 - GFF1757 0.44 -0.8 620,770 + GFF1757 0.71 -0.6 620,770 + GFF1757 0.71 -0.2 620,771 - GFF1757 0.71 +1.0 620,771 - GFF1757 0.71 -0.3 620,833 + GFF1757 0.80 -0.5 620,834 - GFF1757 0.80 -0.0 620,834 - GFF1757 0.80 -0.8 620,834 - GFF1757 0.80 +0.2 621,027 + +0.0 621,028 - -0.1 621,028 - -0.2 621,028 - -0.0 621,028 - -0.1 621,030 + +0.1 621,031 - -0.3 621,078 + -1.5 621,078 + -0.3 621,079 - -0.4 621,079 - -0.3 621,079 - -0.9
Or see this region's nucleotide sequence