Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1720

Experiment: Ying_Nucleobase14 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1719 and GFF1720 are separated by 6 nucleotidesGFF1720 and GFF1721 are separated by 325 nucleotides GFF1719 - Potassium uptake protein TrkH, at 575,034 to 576,494 GFF1719 GFF1720 - Trk system potassium uptake protein TrkA, at 576,501 to 577,892 GFF1720 GFF1721 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 578,218 to 579,348 GFF1721 Position (kb) 576 577 578Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 575.530 kb on + strand, within GFF1719at 575.530 kb on + strand, within GFF1719at 575.531 kb on - strand, within GFF1719at 575.553 kb on + strand, within GFF1719at 575.554 kb on - strand, within GFF1719at 575.637 kb on + strand, within GFF1719at 575.637 kb on + strand, within GFF1719at 575.637 kb on + strand, within GFF1719at 575.638 kb on - strand, within GFF1719at 575.638 kb on - strand, within GFF1719at 575.638 kb on - strand, within GFF1719at 575.638 kb on - strand, within GFF1719at 575.638 kb on - strand, within GFF1719at 575.638 kb on - strand, within GFF1719at 575.638 kb on - strand, within GFF1719at 575.662 kb on + strand, within GFF1719at 575.662 kb on + strand, within GFF1719at 575.662 kb on + strand, within GFF1719at 575.662 kb on + strand, within GFF1719at 575.663 kb on - strand, within GFF1719at 575.663 kb on - strand, within GFF1719at 575.663 kb on - strand, within GFF1719at 575.663 kb on - strand, within GFF1719at 575.663 kb on - strand, within GFF1719at 575.663 kb on - strand, within GFF1719at 575.663 kb on - strand, within GFF1719at 575.663 kb on - strand, within GFF1719at 575.663 kb on - strand, within GFF1719at 575.726 kb on - strand, within GFF1719at 575.797 kb on + strand, within GFF1719at 575.893 kb on + strand, within GFF1719at 575.893 kb on + strand, within GFF1719at 575.894 kb on - strand, within GFF1719at 575.894 kb on - strand, within GFF1719at 575.894 kb on - strand, within GFF1719at 575.894 kb on - strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.926 kb on + strand, within GFF1719at 575.927 kb on + strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 575.927 kb on - strand, within GFF1719at 576.107 kb on + strand, within GFF1719at 576.107 kb on + strand, within GFF1719at 576.107 kb on + strand, within GFF1719at 576.108 kb on - strand, within GFF1719at 576.108 kb on - strand, within GFF1719at 576.187 kb on + strand, within GFF1719at 576.187 kb on + strand, within GFF1719at 576.187 kb on + strand, within GFF1719at 576.187 kb on + strand, within GFF1719at 576.188 kb on - strand, within GFF1719at 576.188 kb on - strand, within GFF1719at 576.188 kb on - strand, within GFF1719at 576.367 kb on + strandat 576.368 kb on - strandat 576.368 kb on - strandat 576.368 kb on - strandat 576.400 kb on - strandat 576.490 kb on + strandat 576.890 kb on - strand, within GFF1720at 576.890 kb on - strand, within GFF1720at 577.090 kb on + strand, within GFF1720at 577.090 kb on + strand, within GFF1720at 577.091 kb on - strand, within GFF1720at 577.091 kb on - strand, within GFF1720at 577.330 kb on + strand, within GFF1720at 577.497 kb on + strand, within GFF1720at 577.498 kb on - strand, within GFF1720at 577.501 kb on + strand, within GFF1720at 577.501 kb on + strand, within GFF1720at 577.501 kb on + strand, within GFF1720at 577.502 kb on - strand, within GFF1720at 577.502 kb on - strand, within GFF1720at 577.502 kb on - strand, within GFF1720at 577.814 kb on + strandat 577.815 kb on - strandat 577.815 kb on - strandat 577.906 kb on + strandat 577.906 kb on + strandat 577.906 kb on + strandat 577.906 kb on + strandat 577.907 kb on - strandat 577.907 kb on - strandat 577.943 kb on + strandat 577.943 kb on + strandat 578.270 kb on + strandat 578.270 kb on + strandat 578.270 kb on + strandat 578.270 kb on + strandat 578.270 kb on + strandat 578.270 kb on + strandat 578.270 kb on + strandat 578.271 kb on - strandat 578.271 kb on - strandat 578.271 kb on - strandat 578.271 kb on - strandat 578.271 kb on - strandat 578.297 kb on + strandat 578.297 kb on + strandat 578.297 kb on + strandat 578.298 kb on - strandat 578.298 kb on - strandat 578.298 kb on - strandat 578.327 kb on + strandat 578.327 kb on + strandat 578.327 kb on + strandat 578.327 kb on + strandat 578.327 kb on + strandat 578.327 kb on + strandat 578.328 kb on - strandat 578.328 kb on - strandat 578.328 kb on - strandat 578.328 kb on - strandat 578.328 kb on - strandat 578.328 kb on - strandat 578.333 kb on + strand, within GFF1721at 578.565 kb on - strand, within GFF1721at 578.565 kb on - strand, within GFF1721at 578.777 kb on + strand, within GFF1721at 578.777 kb on + strand, within GFF1721at 578.777 kb on + strand, within GFF1721at 578.777 kb on + strand, within GFF1721at 578.778 kb on - strand, within GFF1721at 578.778 kb on - strand, within GFF1721at 578.778 kb on - strand, within GFF1721

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1
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575,530 + GFF1719 0.34 +0.2
575,530 + GFF1719 0.34 -0.1
575,531 - GFF1719 0.34 +0.2
575,553 + GFF1719 0.36 -0.1
575,554 - GFF1719 0.36 -1.2
575,637 + GFF1719 0.41 -0.2
575,637 + GFF1719 0.41 -0.0
575,637 + GFF1719 0.41 +0.1
575,638 - GFF1719 0.41 -0.8
575,638 - GFF1719 0.41 -0.4
575,638 - GFF1719 0.41 +0.2
575,638 - GFF1719 0.41 -2.0
575,638 - GFF1719 0.41 -0.5
575,638 - GFF1719 0.41 +0.1
575,638 - GFF1719 0.41 -0.2
575,662 + GFF1719 0.43 -0.1
575,662 + GFF1719 0.43 -1.3
575,662 + GFF1719 0.43 -0.5
575,662 + GFF1719 0.43 +0.5
575,663 - GFF1719 0.43 +0.2
575,663 - GFF1719 0.43 +0.1
575,663 - GFF1719 0.43 -1.2
575,663 - GFF1719 0.43 +0.6
575,663 - GFF1719 0.43 -0.1
575,663 - GFF1719 0.43 +0.1
575,663 - GFF1719 0.43 -0.4
575,663 - GFF1719 0.43 +0.0
575,663 - GFF1719 0.43 -0.4
575,726 - GFF1719 0.47 -0.0
575,797 + GFF1719 0.52 -0.7
575,893 + GFF1719 0.59 +0.5
575,893 + GFF1719 0.59 +0.6
575,894 - GFF1719 0.59 +1.6
575,894 - GFF1719 0.59 -0.7
575,894 - GFF1719 0.59 +1.5
575,894 - GFF1719 0.59 +0.0
575,926 + GFF1719 0.61 +0.2
575,926 + GFF1719 0.61 -0.0
575,926 + GFF1719 0.61 +0.5
575,926 + GFF1719 0.61 -0.1
575,926 + GFF1719 0.61 -1.1
575,926 + GFF1719 0.61 +0.3
575,926 + GFF1719 0.61 -0.3
575,926 + GFF1719 0.61 -0.1
575,926 + GFF1719 0.61 -0.1
575,926 + GFF1719 0.61 +0.3
575,926 + GFF1719 0.61 -0.7
575,926 + GFF1719 0.61 -2.5
575,926 + GFF1719 0.61 +0.9
575,926 + GFF1719 0.61 -1.1
575,926 + GFF1719 0.61 +0.3
575,926 + GFF1719 0.61 +0.0
575,926 + GFF1719 0.61 -0.3
575,926 + GFF1719 0.61 -0.0
575,926 + GFF1719 0.61 +0.0
575,926 + GFF1719 0.61 +0.2
575,926 + GFF1719 0.61 +1.9
575,926 + GFF1719 0.61 +0.3
575,926 + GFF1719 0.61 -0.3
575,926 + GFF1719 0.61 +0.8
575,927 + GFF1719 0.61 +0.4
575,927 - GFF1719 0.61 +0.3
575,927 - GFF1719 0.61 +0.6
575,927 - GFF1719 0.61 -0.4
575,927 - GFF1719 0.61 +0.0
575,927 - GFF1719 0.61 +0.1
575,927 - GFF1719 0.61 -2.3
575,927 - GFF1719 0.61 +0.4
575,927 - GFF1719 0.61 -0.1
575,927 - GFF1719 0.61 -0.1
575,927 - GFF1719 0.61 +0.3
575,927 - GFF1719 0.61 +0.7
575,927 - GFF1719 0.61 -0.3
575,927 - GFF1719 0.61 +0.7
575,927 - GFF1719 0.61 -0.1
575,927 - GFF1719 0.61 +0.1
575,927 - GFF1719 0.61 +0.2
575,927 - GFF1719 0.61 +0.0
575,927 - GFF1719 0.61 -1.4
575,927 - GFF1719 0.61 +0.2
575,927 - GFF1719 0.61 -0.3
575,927 - GFF1719 0.61 +0.4
575,927 - GFF1719 0.61 +0.5
575,927 - GFF1719 0.61 +0.4
575,927 - GFF1719 0.61 +1.0
576,107 + GFF1719 0.73 +0.0
576,107 + GFF1719 0.73 -0.9
576,107 + GFF1719 0.73 -0.7
576,108 - GFF1719 0.74 +0.0
576,108 - GFF1719 0.74 -1.0
576,187 + GFF1719 0.79 +0.3
576,187 + GFF1719 0.79 +0.1
576,187 + GFF1719 0.79 +1.1
576,187 + GFF1719 0.79 -0.3
576,188 - GFF1719 0.79 +0.0
576,188 - GFF1719 0.79 +0.2
576,188 - GFF1719 0.79 -0.0
576,367 + -2.3
576,368 - +0.2
576,368 - +0.1
576,368 - +0.0
576,400 - +0.5
576,490 + +0.2
576,890 - GFF1720 0.28 -0.2
576,890 - GFF1720 0.28 +1.1
577,090 + GFF1720 0.42 +1.0
577,090 + GFF1720 0.42 -0.4
577,091 - GFF1720 0.42 +0.3
577,091 - GFF1720 0.42 +0.7
577,330 + GFF1720 0.60 -0.1
577,497 + GFF1720 0.72 +0.5
577,498 - GFF1720 0.72 +0.4
577,501 + GFF1720 0.72 +0.2
577,501 + GFF1720 0.72 -0.0
577,501 + GFF1720 0.72 +0.5
577,502 - GFF1720 0.72 -1.0
577,502 - GFF1720 0.72 +0.1
577,502 - GFF1720 0.72 +0.5
577,814 + -1.1
577,815 - -0.1
577,815 - -0.5
577,906 + +0.1
577,906 + -0.3
577,906 + +0.4
577,906 + -2.8
577,907 - -0.4
577,907 - +0.3
577,943 + -1.5
577,943 + +0.5
578,270 + -1.2
578,270 + +0.8
578,270 + +0.5
578,270 + -3.0
578,270 + +0.4
578,270 + +0.2
578,270 + +0.8
578,271 - +0.0
578,271 - +0.1
578,271 - -1.0
578,271 - +0.6
578,271 - -0.5
578,297 + -0.5
578,297 + -0.0
578,297 + -0.5
578,298 - +0.0
578,298 - -0.3
578,298 - -0.4
578,327 + +0.6
578,327 + +0.5
578,327 + -0.0
578,327 + +0.0
578,327 + +0.4
578,327 + -0.7
578,328 - -0.7
578,328 - -1.0
578,328 - +1.5
578,328 - +0.2
578,328 - +0.2
578,328 - +0.6
578,333 + GFF1721 0.10 +0.3
578,565 - GFF1721 0.31 +0.3
578,565 - GFF1721 0.31 +0.0
578,777 + GFF1721 0.49 +1.3
578,777 + GFF1721 0.49 -0.1
578,777 + GFF1721 0.49 +0.6
578,777 + GFF1721 0.49 +0.2
578,778 - GFF1721 0.50 -0.5
578,778 - GFF1721 0.50 +0.5
578,778 - GFF1721 0.50 -0.6

Or see this region's nucleotide sequence