Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1425

Experiment: Ying_Nucleobase14 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1423 and GFF1424 are separated by 11 nucleotidesGFF1424 and GFF1425 are separated by 61 nucleotidesGFF1425 and GFF1426 are separated by 80 nucleotidesGFF1426 and GFF1427 are separated by 57 nucleotides GFF1423 - hypothetical protein, at 279,835 to 280,122 GFF1423 GFF1424 - L-lysine permease, at 280,134 to 280,772 GFF1424 GFF1425 - hypothetical protein, at 280,834 to 281,205 GFF1425 GFF1426 - hypothetical protein, at 281,286 to 281,867 GFF1426 GFF1427 - hypothetical protein, at 281,925 to 282,458 GFF1427 Position (kb) 280 281 282Strain fitness (log2 ratio) -2 -1 0 1 2at 279.854 kb on + strandat 280.010 kb on + strand, within GFF1423at 280.011 kb on - strand, within GFF1423at 280.201 kb on + strand, within GFF1424at 280.201 kb on + strand, within GFF1424at 280.201 kb on + strand, within GFF1424at 280.202 kb on - strand, within GFF1424at 280.202 kb on - strand, within GFF1424at 280.202 kb on - strand, within GFF1424at 280.202 kb on - strand, within GFF1424at 280.202 kb on - strand, within GFF1424at 280.202 kb on - strand, within GFF1424at 280.381 kb on + strand, within GFF1424at 280.381 kb on + strand, within GFF1424at 280.381 kb on + strand, within GFF1424at 280.382 kb on - strand, within GFF1424at 280.382 kb on - strand, within GFF1424at 280.516 kb on + strand, within GFF1424at 280.516 kb on + strand, within GFF1424at 280.517 kb on - strand, within GFF1424at 280.517 kb on - strand, within GFF1424at 280.517 kb on - strand, within GFF1424at 280.517 kb on - strand, within GFF1424at 280.526 kb on - strand, within GFF1424at 280.526 kb on - strand, within GFF1424at 280.526 kb on - strand, within GFF1424at 280.555 kb on + strand, within GFF1424at 280.555 kb on + strand, within GFF1424at 280.555 kb on + strand, within GFF1424at 280.556 kb on - strand, within GFF1424at 280.693 kb on + strand, within GFF1424at 280.693 kb on + strand, within GFF1424at 280.693 kb on + strand, within GFF1424at 280.693 kb on + strand, within GFF1424at 280.693 kb on + strand, within GFF1424at 280.694 kb on - strand, within GFF1424at 280.694 kb on - strand, within GFF1424at 280.809 kb on + strandat 280.810 kb on - strandat 280.810 kb on - strandat 280.810 kb on - strandat 280.810 kb on - strandat 280.810 kb on - strandat 280.997 kb on + strand, within GFF1425at 281.108 kb on + strand, within GFF1425at 281.108 kb on + strand, within GFF1425at 281.108 kb on + strand, within GFF1425at 281.108 kb on + strand, within GFF1425at 281.109 kb on - strand, within GFF1425at 281.109 kb on - strand, within GFF1425at 281.109 kb on - strand, within GFF1425at 281.109 kb on - strand, within GFF1425at 281.445 kb on + strand, within GFF1426at 281.739 kb on + strand, within GFF1426at 281.739 kb on + strand, within GFF1426at 281.739 kb on + strand, within GFF1426at 281.739 kb on + strand, within GFF1426at 281.740 kb on - strand, within GFF1426at 281.740 kb on - strand, within GFF1426at 281.763 kb on + strand, within GFF1426at 281.763 kb on + strand, within GFF1426at 281.764 kb on - strand, within GFF1426at 281.983 kb on + strand, within GFF1427at 281.983 kb on + strand, within GFF1427at 281.983 kb on + strand, within GFF1427at 281.983 kb on + strand, within GFF1427at 281.984 kb on - strand, within GFF1427at 281.984 kb on - strand, within GFF1427at 281.984 kb on - strand, within GFF1427at 281.984 kb on - strand, within GFF1427at 281.984 kb on - strand, within GFF1427at 281.984 kb on - strand, within GFF1427at 281.986 kb on + strand, within GFF1427at 281.986 kb on + strand, within GFF1427at 281.987 kb on - strand, within GFF1427at 281.987 kb on - strand, within GFF1427at 281.987 kb on - strand, within GFF1427at 281.987 kb on - strand, within GFF1427at 281.987 kb on - strand, within GFF1427at 281.987 kb on - strand, within GFF1427at 282.010 kb on + strand, within GFF1427at 282.010 kb on + strand, within GFF1427at 282.010 kb on + strand, within GFF1427at 282.010 kb on + strand, within GFF1427at 282.011 kb on - strand, within GFF1427at 282.011 kb on - strand, within GFF1427at 282.028 kb on + strand, within GFF1427at 282.028 kb on + strand, within GFF1427at 282.028 kb on + strand, within GFF1427at 282.028 kb on + strand, within GFF1427at 282.028 kb on + strand, within GFF1427at 282.049 kb on + strand, within GFF1427at 282.118 kb on + strand, within GFF1427at 282.119 kb on - strand, within GFF1427

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1
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279,854 + +0.6
280,010 + GFF1423 0.61 +0.2
280,011 - GFF1423 0.61 -2.3
280,201 + GFF1424 0.10 +1.0
280,201 + GFF1424 0.10 -1.4
280,201 + GFF1424 0.10 -1.2
280,202 - GFF1424 0.11 +1.8
280,202 - GFF1424 0.11 -0.5
280,202 - GFF1424 0.11 +0.6
280,202 - GFF1424 0.11 +0.1
280,202 - GFF1424 0.11 +0.4
280,202 - GFF1424 0.11 -0.2
280,381 + GFF1424 0.39 +0.7
280,381 + GFF1424 0.39 +0.1
280,381 + GFF1424 0.39 -0.1
280,382 - GFF1424 0.39 +0.6
280,382 - GFF1424 0.39 +0.7
280,516 + GFF1424 0.60 +0.0
280,516 + GFF1424 0.60 -0.7
280,517 - GFF1424 0.60 -0.4
280,517 - GFF1424 0.60 -0.9
280,517 - GFF1424 0.60 +0.8
280,517 - GFF1424 0.60 +0.3
280,526 - GFF1424 0.61 -0.3
280,526 - GFF1424 0.61 +0.2
280,526 - GFF1424 0.61 +0.2
280,555 + GFF1424 0.66 -1.9
280,555 + GFF1424 0.66 -1.9
280,555 + GFF1424 0.66 -0.2
280,556 - GFF1424 0.66 +2.0
280,693 + GFF1424 0.87 +1.2
280,693 + GFF1424 0.87 +0.0
280,693 + GFF1424 0.87 +0.0
280,693 + GFF1424 0.87 -1.0
280,693 + GFF1424 0.87 +0.8
280,694 - GFF1424 0.88 -0.7
280,694 - GFF1424 0.88 -0.1
280,809 + -0.3
280,810 - -0.0
280,810 - +0.3
280,810 - -0.7
280,810 - +0.8
280,810 - -0.3
280,997 + GFF1425 0.44 +0.7
281,108 + GFF1425 0.74 +1.2
281,108 + GFF1425 0.74 -0.4
281,108 + GFF1425 0.74 +0.9
281,108 + GFF1425 0.74 -2.5
281,109 - GFF1425 0.74 -0.1
281,109 - GFF1425 0.74 +0.7
281,109 - GFF1425 0.74 +0.4
281,109 - GFF1425 0.74 -0.5
281,445 + GFF1426 0.27 +0.4
281,739 + GFF1426 0.78 -0.2
281,739 + GFF1426 0.78 +2.0
281,739 + GFF1426 0.78 -0.9
281,739 + GFF1426 0.78 -0.5
281,740 - GFF1426 0.78 -0.1
281,740 - GFF1426 0.78 +0.6
281,763 + GFF1426 0.82 -0.1
281,763 + GFF1426 0.82 -1.3
281,764 - GFF1426 0.82 +0.3
281,983 + GFF1427 0.11 +0.8
281,983 + GFF1427 0.11 +0.6
281,983 + GFF1427 0.11 -0.0
281,983 + GFF1427 0.11 -0.6
281,984 - GFF1427 0.11 +0.2
281,984 - GFF1427 0.11 -0.4
281,984 - GFF1427 0.11 -0.2
281,984 - GFF1427 0.11 +0.8
281,984 - GFF1427 0.11 +0.2
281,984 - GFF1427 0.11 +0.4
281,986 + GFF1427 0.11 +0.1
281,986 + GFF1427 0.11 -0.2
281,987 - GFF1427 0.12 -0.3
281,987 - GFF1427 0.12 -0.4
281,987 - GFF1427 0.12 -1.0
281,987 - GFF1427 0.12 -0.1
281,987 - GFF1427 0.12 -2.7
281,987 - GFF1427 0.12 -0.1
282,010 + GFF1427 0.16 -0.1
282,010 + GFF1427 0.16 -1.2
282,010 + GFF1427 0.16 -0.6
282,010 + GFF1427 0.16 -0.2
282,011 - GFF1427 0.16 +0.1
282,011 - GFF1427 0.16 +0.9
282,028 + GFF1427 0.19 -0.0
282,028 + GFF1427 0.19 +0.7
282,028 + GFF1427 0.19 -0.1
282,028 + GFF1427 0.19 -1.4
282,028 + GFF1427 0.19 +0.4
282,049 + GFF1427 0.23 -1.0
282,118 + GFF1427 0.36 -0.3
282,119 - GFF1427 0.36 +0.1

Or see this region's nucleotide sequence