Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1322

Experiment: Ying_Nucleobase14 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1320 and GFF1321 are separated by 3 nucleotidesGFF1321 and GFF1322 are separated by 119 nucleotidesGFF1322 and GFF1323 are separated by 113 nucleotidesGFF1323 and GFF1324 are separated by 15 nucleotides GFF1320 - Sulfate transporter/antisigma-factor antagonist STAS, at 170,092 to 170,364 GFF1320 GFF1321 - Uncharacterized ABC transporter, auxiliary component YrbC, at 170,368 to 171,000 GFF1321 GFF1322 - Nucleoside ABC transporter, periplasmic nucleoside-binding protein, at 171,120 to 171,860 GFF1322 GFF1323 - Uncharacterized ABC transporter, periplasmic component YrbD, at 171,974 to 172,462 GFF1323 GFF1324 - Uncharacterized ABC transporter, permease component YrbE, at 172,478 to 173,260 GFF1324 Position (kb) 171 172Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 170.121 kb on - strand, within GFF1320at 170.510 kb on + strand, within GFF1321at 170.510 kb on + strand, within GFF1321at 170.510 kb on + strand, within GFF1321at 170.510 kb on + strand, within GFF1321at 170.510 kb on + strand, within GFF1321at 170.510 kb on + strand, within GFF1321at 170.510 kb on + strand, within GFF1321at 170.510 kb on + strand, within GFF1321at 170.510 kb on + strand, within GFF1321at 170.510 kb on + strand, within GFF1321at 170.510 kb on + strand, within GFF1321at 170.510 kb on + strand, within GFF1321at 170.510 kb on + strand, within GFF1321at 170.511 kb on - strand, within GFF1321at 170.511 kb on - strand, within GFF1321at 170.511 kb on - strand, within GFF1321at 170.511 kb on - strand, within GFF1321at 170.511 kb on - strand, within GFF1321at 170.511 kb on - strand, within GFF1321at 170.511 kb on - strand, within GFF1321at 170.511 kb on - strand, within GFF1321at 170.546 kb on + strand, within GFF1321at 170.601 kb on - strand, within GFF1321at 170.675 kb on + strand, within GFF1321at 170.675 kb on + strand, within GFF1321at 170.675 kb on + strand, within GFF1321at 170.675 kb on + strand, within GFF1321at 170.675 kb on + strand, within GFF1321at 170.675 kb on + strand, within GFF1321at 170.675 kb on + strand, within GFF1321at 170.675 kb on + strand, within GFF1321at 170.676 kb on - strand, within GFF1321at 170.676 kb on - strand, within GFF1321at 170.676 kb on - strand, within GFF1321at 170.676 kb on - strand, within GFF1321at 171.047 kb on + strandat 171.047 kb on + strandat 171.047 kb on + strandat 171.047 kb on + strandat 171.047 kb on + strandat 171.047 kb on + strandat 171.048 kb on - strandat 171.048 kb on - strandat 171.048 kb on - strandat 171.103 kb on + strandat 171.104 kb on - strandat 171.194 kb on - strand, within GFF1322at 171.214 kb on + strand, within GFF1322at 171.214 kb on + strand, within GFF1322at 171.214 kb on + strand, within GFF1322at 171.215 kb on - strand, within GFF1322at 171.215 kb on - strand, within GFF1322at 171.215 kb on - strand, within GFF1322at 171.215 kb on - strand, within GFF1322at 171.215 kb on - strand, within GFF1322at 171.215 kb on - strand, within GFF1322at 171.215 kb on - strand, within GFF1322at 171.215 kb on - strand, within GFF1322at 171.215 kb on - strand, within GFF1322at 171.218 kb on + strand, within GFF1322at 171.218 kb on + strand, within GFF1322at 171.219 kb on - strand, within GFF1322at 171.219 kb on - strand, within GFF1322at 171.409 kb on + strand, within GFF1322at 171.409 kb on + strand, within GFF1322at 171.409 kb on + strand, within GFF1322at 171.409 kb on + strand, within GFF1322at 171.409 kb on + strand, within GFF1322at 171.409 kb on + strand, within GFF1322at 171.409 kb on + strand, within GFF1322at 171.409 kb on + strand, within GFF1322at 171.409 kb on + strand, within GFF1322at 171.410 kb on - strand, within GFF1322at 171.410 kb on - strand, within GFF1322at 171.410 kb on - strand, within GFF1322at 171.410 kb on - strand, within GFF1322at 171.410 kb on - strand, within GFF1322at 171.410 kb on - strand, within GFF1322at 171.664 kb on + strand, within GFF1322at 171.664 kb on + strand, within GFF1322at 171.718 kb on + strand, within GFF1322at 171.718 kb on + strand, within GFF1322at 171.719 kb on - strand, within GFF1322at 171.719 kb on - strand, within GFF1322at 171.719 kb on - strand, within GFF1322at 171.902 kb on + strandat 171.902 kb on + strandat 171.902 kb on + strandat 171.915 kb on + strandat 171.915 kb on + strandat 171.915 kb on + strandat 171.916 kb on - strandat 171.916 kb on - strandat 171.916 kb on - strandat 171.916 kb on - strandat 171.916 kb on - strandat 171.916 kb on - strandat 171.916 kb on - strandat 171.916 kb on - strandat 171.916 kb on - strandat 171.916 kb on - strandat 171.937 kb on + strandat 171.937 kb on + strandat 171.937 kb on + strandat 171.938 kb on - strandat 171.938 kb on - strandat 171.975 kb on + strandat 171.975 kb on + strandat 171.975 kb on + strandat 171.976 kb on - strandat 171.976 kb on - strandat 171.976 kb on - strandat 171.976 kb on - strandat 172.134 kb on + strand, within GFF1323at 172.134 kb on + strand, within GFF1323at 172.134 kb on + strand, within GFF1323at 172.134 kb on + strand, within GFF1323at 172.134 kb on + strand, within GFF1323at 172.135 kb on - strand, within GFF1323at 172.135 kb on - strand, within GFF1323at 172.135 kb on - strand, within GFF1323at 172.135 kb on - strand, within GFF1323at 172.135 kb on - strand, within GFF1323at 172.135 kb on - strand, within GFF1323at 172.135 kb on - strand, within GFF1323at 172.194 kb on + strand, within GFF1323at 172.195 kb on - strand, within GFF1323at 172.195 kb on - strand, within GFF1323at 172.195 kb on - strand, within GFF1323at 172.195 kb on - strand, within GFF1323at 172.195 kb on - strand, within GFF1323at 172.344 kb on + strand, within GFF1323at 172.344 kb on + strand, within GFF1323at 172.344 kb on + strand, within GFF1323at 172.345 kb on - strand, within GFF1323at 172.345 kb on - strand, within GFF1323at 172.345 kb on - strand, within GFF1323at 172.345 kb on - strand, within GFF1323at 172.345 kb on - strand, within GFF1323at 172.345 kb on - strand, within GFF1323at 172.345 kb on - strand, within GFF1323at 172.604 kb on + strand, within GFF1324at 172.605 kb on - strand, within GFF1324at 172.605 kb on - strand, within GFF1324at 172.605 kb on - strand, within GFF1324

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1
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170,121 - GFF1320 0.11 -1.4
170,510 + GFF1321 0.22 +0.0
170,510 + GFF1321 0.22 -0.7
170,510 + GFF1321 0.22 -0.2
170,510 + GFF1321 0.22 +1.0
170,510 + GFF1321 0.22 +0.3
170,510 + GFF1321 0.22 -1.8
170,510 + GFF1321 0.22 -0.3
170,510 + GFF1321 0.22 -0.5
170,510 + GFF1321 0.22 +0.1
170,510 + GFF1321 0.22 -1.3
170,510 + GFF1321 0.22 +0.8
170,510 + GFF1321 0.22 -1.3
170,510 + GFF1321 0.22 -0.5
170,511 - GFF1321 0.23 -0.7
170,511 - GFF1321 0.23 -1.3
170,511 - GFF1321 0.23 -0.3
170,511 - GFF1321 0.23 -1.9
170,511 - GFF1321 0.23 -1.0
170,511 - GFF1321 0.23 -0.5
170,511 - GFF1321 0.23 -1.9
170,511 - GFF1321 0.23 -0.9
170,546 + GFF1321 0.28 +0.1
170,601 - GFF1321 0.37 -1.5
170,675 + GFF1321 0.48 -1.9
170,675 + GFF1321 0.48 -0.5
170,675 + GFF1321 0.48 -0.7
170,675 + GFF1321 0.48 +0.1
170,675 + GFF1321 0.48 +0.1
170,675 + GFF1321 0.48 -0.9
170,675 + GFF1321 0.48 +0.3
170,675 + GFF1321 0.48 -0.1
170,676 - GFF1321 0.49 +0.9
170,676 - GFF1321 0.49 +0.2
170,676 - GFF1321 0.49 -1.5
170,676 - GFF1321 0.49 -0.5
171,047 + +1.2
171,047 + -0.0
171,047 + +2.2
171,047 + +0.2
171,047 + -1.2
171,047 + +0.1
171,048 - +0.7
171,048 - -0.2
171,048 - -0.0
171,103 + -0.4
171,104 - -0.2
171,194 - GFF1322 0.10 -0.6
171,214 + GFF1322 0.13 -0.1
171,214 + GFF1322 0.13 -0.4
171,214 + GFF1322 0.13 -1.2
171,215 - GFF1322 0.13 -0.8
171,215 - GFF1322 0.13 -1.0
171,215 - GFF1322 0.13 +0.2
171,215 - GFF1322 0.13 -0.6
171,215 - GFF1322 0.13 -0.6
171,215 - GFF1322 0.13 -2.0
171,215 - GFF1322 0.13 -0.3
171,215 - GFF1322 0.13 -2.9
171,215 - GFF1322 0.13 -1.0
171,218 + GFF1322 0.13 -0.9
171,218 + GFF1322 0.13 -0.6
171,219 - GFF1322 0.13 -0.2
171,219 - GFF1322 0.13 +0.1
171,409 + GFF1322 0.39 -1.7
171,409 + GFF1322 0.39 -0.6
171,409 + GFF1322 0.39 +0.6
171,409 + GFF1322 0.39 -0.3
171,409 + GFF1322 0.39 -0.2
171,409 + GFF1322 0.39 -0.4
171,409 + GFF1322 0.39 -1.2
171,409 + GFF1322 0.39 -0.9
171,409 + GFF1322 0.39 -1.6
171,410 - GFF1322 0.39 -0.7
171,410 - GFF1322 0.39 -0.7
171,410 - GFF1322 0.39 -1.1
171,410 - GFF1322 0.39 -1.4
171,410 - GFF1322 0.39 -0.3
171,410 - GFF1322 0.39 -0.8
171,664 + GFF1322 0.73 -2.1
171,664 + GFF1322 0.73 -0.2
171,718 + GFF1322 0.81 -0.3
171,718 + GFF1322 0.81 -1.4
171,719 - GFF1322 0.81 -0.8
171,719 - GFF1322 0.81 -0.2
171,719 - GFF1322 0.81 -0.8
171,902 + -0.6
171,902 + +0.6
171,902 + +0.0
171,915 + -0.3
171,915 + -1.4
171,915 + +0.1
171,916 - -0.2
171,916 - +0.9
171,916 - -0.3
171,916 - -0.1
171,916 - -1.1
171,916 - -1.6
171,916 - +0.2
171,916 - +0.7
171,916 - +0.4
171,916 - +0.2
171,937 + +0.2
171,937 + -1.7
171,937 + -0.2
171,938 - +0.0
171,938 - +0.1
171,975 + -0.1
171,975 + -1.9
171,975 + -0.2
171,976 - +1.0
171,976 - -0.0
171,976 - -0.7
171,976 - -0.8
172,134 + GFF1323 0.33 -0.0
172,134 + GFF1323 0.33 +0.0
172,134 + GFF1323 0.33 -0.3
172,134 + GFF1323 0.33 +1.4
172,134 + GFF1323 0.33 -0.8
172,135 - GFF1323 0.33 -0.0
172,135 - GFF1323 0.33 -0.5
172,135 - GFF1323 0.33 -0.2
172,135 - GFF1323 0.33 -0.7
172,135 - GFF1323 0.33 +0.4
172,135 - GFF1323 0.33 -1.2
172,135 - GFF1323 0.33 -0.8
172,194 + GFF1323 0.45 -2.1
172,195 - GFF1323 0.45 -0.4
172,195 - GFF1323 0.45 +0.1
172,195 - GFF1323 0.45 -0.8
172,195 - GFF1323 0.45 -0.3
172,195 - GFF1323 0.45 -0.4
172,344 + GFF1323 0.76 -1.8
172,344 + GFF1323 0.76 -0.7
172,344 + GFF1323 0.76 -2.0
172,345 - GFF1323 0.76 -0.3
172,345 - GFF1323 0.76 -0.1
172,345 - GFF1323 0.76 -0.1
172,345 - GFF1323 0.76 -0.5
172,345 - GFF1323 0.76 -1.0
172,345 - GFF1323 0.76 -1.1
172,345 - GFF1323 0.76 -0.7
172,604 + GFF1324 0.16 -1.9
172,605 - GFF1324 0.16 -0.7
172,605 - GFF1324 0.16 +1.0
172,605 - GFF1324 0.16 -0.8

Or see this region's nucleotide sequence