Experiment: Ying_Nucleobase14 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF130 and GFF131 overlap by 1 nucleotides GFF131 and GFF132 overlap by 29 nucleotides GFF132 and GFF133 are separated by 23 nucleotides GFF133 and GFF134 overlap by 38 nucleotides
GFF130 - TRAP transporter solute receptor, unknown substrate 3, at 145,689 to 146,750
GFF130
GFF131 - TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 3, at 146,750 to 147,256
GFF131
GFF132 - TRAP dicarboxylate transporter, DctM subunit, unknown substrate 3, at 147,228 to 148,547
GFF132
GFF133 - probable carboxylesterase, at 148,571 to 149,284
GFF133
GFF134 - Permease of the drug/metabolite transporter (DMT) superfamily, at 149,247 to 150,206
GFF134
Position (kb) 147
148
149 Strain fitness (log2 ratio) -1
0
1 at 146.841 kb on - strand, within GFF131 at 146.930 kb on + strand, within GFF131 at 147.122 kb on + strand, within GFF131 at 147.423 kb on + strand, within GFF132 at 147.423 kb on + strand, within GFF132 at 147.654 kb on + strand, within GFF132 at 147.739 kb on - strand, within GFF132 at 147.816 kb on + strand, within GFF132 at 147.816 kb on + strand, within GFF132 at 148.122 kb on + strand, within GFF132 at 148.123 kb on - strand, within GFF132 at 148.134 kb on + strand, within GFF132 at 148.204 kb on - strand, within GFF132 at 148.234 kb on - strand, within GFF132 at 148.446 kb on + strand at 148.447 kb on - strand at 148.570 kb on + strand at 148.570 kb on + strand at 148.811 kb on + strand, within GFF133 at 148.812 kb on - strand, within GFF133 at 149.205 kb on - strand, within GFF133 at 149.437 kb on + strand, within GFF134 at 149.438 kb on - strand, within GFF134 at 149.482 kb on + strand, within GFF134 at 149.482 kb on + strand, within GFF134 at 149.482 kb on + strand, within GFF134 at 149.521 kb on + strand, within GFF134
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1 remove 146,841 - GFF131 0.18 -0.2 146,930 + GFF131 0.36 +0.5 147,122 + GFF131 0.73 -0.6 147,423 + GFF132 0.15 -0.2 147,423 + GFF132 0.15 -0.1 147,654 + GFF132 0.32 -1.1 147,739 - GFF132 0.39 -0.7 147,816 + GFF132 0.45 -0.1 147,816 + GFF132 0.45 -0.3 148,122 + GFF132 0.68 +0.2 148,123 - GFF132 0.68 -0.9 148,134 + GFF132 0.69 -0.5 148,204 - GFF132 0.74 +0.8 148,234 - GFF132 0.76 +0.4 148,446 + -1.5 148,447 - +0.5 148,570 + -0.2 148,570 + -1.5 148,811 + GFF133 0.34 +0.5 148,812 - GFF133 0.34 +0.2 149,205 - GFF133 0.89 -0.5 149,437 + GFF134 0.20 -0.5 149,438 - GFF134 0.20 -0.8 149,482 + GFF134 0.24 +1.4 149,482 + GFF134 0.24 +1.4 149,482 + GFF134 0.24 -0.2 149,521 + GFF134 0.29 -0.4
Or see this region's nucleotide sequence