Experiment: Ying_Nucleobase14 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1305 and GFF1306 are separated by 12 nucleotides GFF1306 and GFF1307 are separated by 6 nucleotides GFF1307 and GFF1308 are separated by 91 nucleotides GFF1308 and GFF1309 are separated by 9 nucleotides GFF1309 and GFF1310 are separated by 8 nucleotides
GFF1305 - Probable transmembrane protein, at 158,993 to 159,382
GFF1305
GFF1306 - Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31), at 159,395 to 159,772
GFF1306
GFF1307 - Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19), at 159,779 to 160,168
GFF1307
GFF1308 - hypothetical protein, at 160,260 to 160,757
GFF1308
GFF1309 - Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-), at 160,767 to 161,546
GFF1309
GFF1310 - Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16), at 161,555 to 162,295
GFF1310
Position (kb) 160
161 Strain fitness (log2 ratio) -1
0
1 at 159.306 kb on + strand, within GFF1305 at 159.306 kb on + strand, within GFF1305 at 159.306 kb on + strand, within GFF1305 at 159.306 kb on + strand, within GFF1305 at 159.307 kb on - strand, within GFF1305 at 159.307 kb on - strand, within GFF1305 at 159.307 kb on - strand, within GFF1305 at 159.781 kb on - strand at 159.781 kb on - strand at 159.781 kb on - strand at 159.781 kb on - strand at 159.781 kb on - strand at 159.786 kb on + strand at 159.787 kb on - strand at 159.787 kb on - strand at 159.787 kb on - strand at 160.179 kb on + strand at 160.179 kb on + strand at 160.179 kb on + strand at 160.179 kb on + strand at 160.179 kb on + strand at 160.180 kb on - strand at 160.180 kb on - strand at 160.180 kb on - strand at 160.180 kb on - strand at 160.224 kb on + strand at 160.224 kb on + strand at 160.449 kb on + strand, within GFF1308 at 160.449 kb on + strand, within GFF1308 at 160.449 kb on + strand, within GFF1308 at 160.449 kb on + strand, within GFF1308 at 160.450 kb on - strand, within GFF1308 at 160.450 kb on - strand, within GFF1308 at 160.450 kb on - strand, within GFF1308 at 160.450 kb on - strand, within GFF1308 at 160.450 kb on - strand, within GFF1308 at 160.450 kb on - strand, within GFF1308 at 160.450 kb on - strand, within GFF1308 at 160.452 kb on + strand, within GFF1308 at 160.452 kb on + strand, within GFF1308 at 160.452 kb on + strand, within GFF1308 at 160.453 kb on - strand, within GFF1308 at 160.453 kb on - strand, within GFF1308 at 160.453 kb on - strand, within GFF1308 at 160.560 kb on + strand, within GFF1308 at 160.560 kb on + strand, within GFF1308 at 160.561 kb on - strand, within GFF1308 at 160.561 kb on - strand, within GFF1308 at 160.561 kb on - strand, within GFF1308 at 160.561 kb on - strand, within GFF1308
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1 remove 159,306 + GFF1305 0.80 -1.2 159,306 + GFF1305 0.80 +0.2 159,306 + GFF1305 0.80 +0.2 159,306 + GFF1305 0.80 -0.0 159,307 - GFF1305 0.81 +0.0 159,307 - GFF1305 0.81 -0.4 159,307 - GFF1305 0.81 -0.1 159,781 - +0.0 159,781 - -0.7 159,781 - -0.4 159,781 - +0.7 159,781 - +0.1 159,786 + -0.6 159,787 - +0.3 159,787 - -0.6 159,787 - -0.1 160,179 + -0.0 160,179 + +0.7 160,179 + -0.3 160,179 + +0.4 160,179 + +0.8 160,180 - +1.0 160,180 - -0.2 160,180 - -0.2 160,180 - +0.2 160,224 + +0.0 160,224 + +1.3 160,449 + GFF1308 0.38 +0.7 160,449 + GFF1308 0.38 -0.1 160,449 + GFF1308 0.38 -0.1 160,449 + GFF1308 0.38 +0.9 160,450 - GFF1308 0.38 +0.1 160,450 - GFF1308 0.38 +0.2 160,450 - GFF1308 0.38 +0.3 160,450 - GFF1308 0.38 -0.9 160,450 - GFF1308 0.38 -0.2 160,450 - GFF1308 0.38 +0.6 160,450 - GFF1308 0.38 +0.6 160,452 + GFF1308 0.39 -1.0 160,452 + GFF1308 0.39 +0.1 160,452 + GFF1308 0.39 +0.6 160,453 - GFF1308 0.39 +0.6 160,453 - GFF1308 0.39 +0.2 160,453 - GFF1308 0.39 -0.4 160,560 + GFF1308 0.60 -0.2 160,560 + GFF1308 0.60 -0.1 160,561 - GFF1308 0.60 -1.3 160,561 - GFF1308 0.60 +0.5 160,561 - GFF1308 0.60 -0.4 160,561 - GFF1308 0.60 -0.9
Or see this region's nucleotide sequence