Experiment: Ying_Nucleobase14 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF831 and GFF1078 are separated by 22 nucleotides GFF1078 and GFF1079 are separated by 31 nucleotides
GFF831 - Heat-inducible transcription repressor HrcA, at 527,294 to 528,310
GFF831
GFF1078 - tRNA-Met-CAT, at 528,333 to 528,406
GFF1078
GFF1079 - tRNA-Arg-ACG, at 528,438 to 528,511
GFF1079
Position (kb) 528
529 Strain fitness (log2 ratio) -1
0
1
2 at 528.119 kb on + strand, within GFF831 at 528.119 kb on + strand, within GFF831 at 528.119 kb on + strand, within GFF831 at 528.119 kb on + strand, within GFF831 at 528.119 kb on + strand, within GFF831 at 528.120 kb on - strand, within GFF831 at 528.120 kb on - strand, within GFF831 at 528.179 kb on + strand, within GFF831 at 528.179 kb on + strand, within GFF831 at 528.308 kb on + strand at 528.309 kb on - strand at 528.318 kb on + strand at 528.318 kb on + strand at 528.422 kb on + strand at 528.422 kb on + strand at 528.526 kb on + strand at 528.527 kb on - strand at 528.539 kb on + strand at 528.540 kb on - strand at 528.555 kb on - strand at 528.748 kb on + strand at 528.748 kb on + strand at 528.748 kb on + strand at 528.749 kb on - strand at 528.749 kb on - strand at 528.749 kb on - strand at 528.749 kb on - strand at 528.749 kb on - strand at 528.839 kb on + strand at 528.840 kb on - strand at 529.160 kb on + strand at 529.160 kb on + strand at 529.161 kb on - strand at 529.468 kb on + strand at 529.468 kb on + strand at 529.468 kb on + strand at 529.468 kb on + strand at 529.469 kb on - strand at 529.469 kb on - strand at 529.493 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1 remove 528,119 + GFF831 0.81 -0.4 528,119 + GFF831 0.81 +0.2 528,119 + GFF831 0.81 +1.8 528,119 + GFF831 0.81 +0.0 528,119 + GFF831 0.81 +0.2 528,120 - GFF831 0.81 -0.6 528,120 - GFF831 0.81 -1.0 528,179 + GFF831 0.87 -0.7 528,179 + GFF831 0.87 -0.3 528,308 + -0.0 528,309 - -0.7 528,318 + +0.3 528,318 + -1.2 528,422 + -0.6 528,422 + -0.7 528,526 + -1.0 528,527 - +0.8 528,539 + +0.2 528,540 - -0.1 528,555 - -0.7 528,748 + -0.2 528,748 + +0.2 528,748 + -0.0 528,749 - -0.3 528,749 - +0.1 528,749 - +0.2 528,749 - +0.1 528,749 - -0.3 528,839 + +1.6 528,840 - +0.6 529,160 + -0.4 529,160 + +1.3 529,161 - -0.2 529,468 + +0.3 529,468 + +0.2 529,468 + -0.8 529,468 + +0.1 529,469 - +1.1 529,469 - -0.9 529,493 - -0.0
Or see this region's nucleotide sequence