Experiment: Ying_Nucleobase14 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1060 and GFF1061 are separated by 406 nucleotides GFF1061 and GFF1062 are separated by 279 nucleotides
GFF1060 - Adenylate cyclase (EC 4.6.1.1), at 800,195 to 801,736
GFF1060
GFF1061 - Aerotaxis sensor receptor protein, at 802,143 to 803,627
GFF1061
GFF1062 - Sensory box sensor histidine kinase/response regulator, at 803,907 to 806,171
GFF1062
Position (kb) 802
803
804 Strain fitness (log2 ratio) -2
-1
0
1
2 at 801.631 kb on + strand at 801.743 kb on + strand at 801.743 kb on + strand at 801.743 kb on + strand at 801.744 kb on - strand at 801.756 kb on + strand at 801.756 kb on + strand at 801.756 kb on + strand at 801.756 kb on + strand at 801.757 kb on - strand at 801.757 kb on - strand at 801.818 kb on + strand at 801.818 kb on + strand at 801.819 kb on - strand at 801.875 kb on + strand at 801.875 kb on + strand at 801.876 kb on - strand at 801.876 kb on - strand at 801.986 kb on - strand at 801.986 kb on - strand at 802.007 kb on + strand at 802.007 kb on + strand at 802.007 kb on + strand at 802.007 kb on + strand at 802.007 kb on + strand at 802.007 kb on + strand at 802.007 kb on + strand at 802.007 kb on + strand at 802.007 kb on + strand at 802.007 kb on + strand at 802.007 kb on + strand at 802.007 kb on + strand at 802.008 kb on - strand at 802.008 kb on - strand at 802.008 kb on - strand at 802.008 kb on - strand at 802.008 kb on - strand at 802.008 kb on - strand at 802.008 kb on - strand at 802.008 kb on - strand at 802.008 kb on - strand at 802.008 kb on - strand at 802.008 kb on - strand at 802.008 kb on - strand at 802.008 kb on - strand at 802.074 kb on + strand at 802.075 kb on - strand at 802.149 kb on - strand at 802.254 kb on + strand at 802.389 kb on + strand, within GFF1061 at 802.389 kb on + strand, within GFF1061 at 802.389 kb on + strand, within GFF1061 at 802.389 kb on + strand, within GFF1061 at 802.389 kb on + strand, within GFF1061 at 802.390 kb on - strand, within GFF1061 at 802.390 kb on - strand, within GFF1061 at 802.390 kb on - strand, within GFF1061 at 802.390 kb on - strand, within GFF1061 at 802.390 kb on - strand, within GFF1061 at 802.390 kb on - strand, within GFF1061 at 802.390 kb on - strand, within GFF1061 at 802.569 kb on - strand, within GFF1061 at 802.679 kb on + strand, within GFF1061 at 802.830 kb on - strand, within GFF1061 at 802.830 kb on - strand, within GFF1061 at 802.967 kb on + strand, within GFF1061 at 802.967 kb on + strand, within GFF1061 at 802.968 kb on - strand, within GFF1061 at 802.968 kb on - strand, within GFF1061 at 802.968 kb on - strand, within GFF1061 at 803.038 kb on + strand, within GFF1061 at 803.039 kb on - strand, within GFF1061 at 803.039 kb on - strand, within GFF1061 at 803.039 kb on - strand, within GFF1061 at 803.039 kb on - strand, within GFF1061 at 803.039 kb on - strand, within GFF1061 at 803.039 kb on - strand, within GFF1061 at 803.047 kb on + strand, within GFF1061 at 803.175 kb on + strand, within GFF1061 at 803.356 kb on + strand, within GFF1061 at 803.356 kb on + strand, within GFF1061 at 803.356 kb on + strand, within GFF1061 at 803.356 kb on + strand, within GFF1061 at 803.356 kb on + strand, within GFF1061 at 803.357 kb on - strand, within GFF1061 at 803.357 kb on - strand, within GFF1061 at 803.357 kb on - strand, within GFF1061 at 803.357 kb on - strand, within GFF1061 at 803.357 kb on - strand, within GFF1061 at 803.357 kb on - strand, within GFF1061 at 803.357 kb on - strand, within GFF1061 at 803.357 kb on - strand, within GFF1061 at 803.357 kb on - strand, within GFF1061 at 803.368 kb on - strand, within GFF1061 at 803.368 kb on - strand, within GFF1061 at 803.411 kb on - strand, within GFF1061 at 803.411 kb on - strand, within GFF1061 at 803.438 kb on + strand, within GFF1061 at 803.561 kb on - strand at 803.594 kb on - strand at 803.600 kb on + strand at 803.601 kb on - strand at 803.602 kb on - strand at 803.675 kb on + strand at 803.805 kb on + strand at 803.891 kb on + strand at 803.892 kb on - strand at 803.896 kb on + strand at 803.897 kb on - strand at 803.940 kb on - strand at 803.940 kb on - strand at 803.940 kb on - strand at 803.940 kb on - strand at 804.109 kb on + strand at 804.110 kb on - strand at 804.110 kb on - strand at 804.291 kb on + strand, within GFF1062 at 804.291 kb on + strand, within GFF1062 at 804.292 kb on - strand, within GFF1062 at 804.292 kb on - strand, within GFF1062 at 804.292 kb on - strand, within GFF1062 at 804.538 kb on + strand, within GFF1062
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1 remove 801,631 + +0.1 801,743 + +0.3 801,743 + -0.4 801,743 + -1.2 801,744 - +0.3 801,756 + -0.1 801,756 + -0.5 801,756 + -0.2 801,756 + -1.0 801,757 - -0.2 801,757 - +1.6 801,818 + -0.6 801,818 + +0.8 801,819 - -1.2 801,875 + -0.0 801,875 + +0.1 801,876 - -0.5 801,876 - +0.8 801,986 - -0.6 801,986 - +0.8 802,007 + +0.1 802,007 + -0.5 802,007 + +1.1 802,007 + -0.6 802,007 + -0.2 802,007 + -0.2 802,007 + -0.4 802,007 + -0.2 802,007 + +0.2 802,007 + -0.0 802,007 + +0.9 802,007 + -0.4 802,008 - +0.1 802,008 - +0.4 802,008 - -0.1 802,008 - -1.7 802,008 - -0.9 802,008 - +0.7 802,008 - -1.7 802,008 - -0.6 802,008 - -0.6 802,008 - +0.0 802,008 - -1.2 802,008 - -0.3 802,008 - -0.8 802,074 + -0.2 802,075 - +0.0 802,149 - -0.7 802,254 + -0.2 802,389 + GFF1061 0.17 -0.8 802,389 + GFF1061 0.17 -0.8 802,389 + GFF1061 0.17 -0.1 802,389 + GFF1061 0.17 -0.3 802,389 + GFF1061 0.17 +0.2 802,390 - GFF1061 0.17 -0.0 802,390 - GFF1061 0.17 -0.1 802,390 - GFF1061 0.17 -0.5 802,390 - GFF1061 0.17 +0.0 802,390 - GFF1061 0.17 +1.8 802,390 - GFF1061 0.17 -0.0 802,390 - GFF1061 0.17 -0.4 802,569 - GFF1061 0.29 +0.0 802,679 + GFF1061 0.36 -0.2 802,830 - GFF1061 0.46 -2.1 802,830 - GFF1061 0.46 -0.3 802,967 + GFF1061 0.55 -0.0 802,967 + GFF1061 0.55 +0.2 802,968 - GFF1061 0.56 +0.1 802,968 - GFF1061 0.56 +0.8 802,968 - GFF1061 0.56 -0.3 803,038 + GFF1061 0.60 -0.1 803,039 - GFF1061 0.60 +0.3 803,039 - GFF1061 0.60 +0.6 803,039 - GFF1061 0.60 +0.1 803,039 - GFF1061 0.60 +0.0 803,039 - GFF1061 0.60 -0.7 803,039 - GFF1061 0.60 +0.0 803,047 + GFF1061 0.61 -0.6 803,175 + GFF1061 0.69 -1.3 803,356 + GFF1061 0.82 +0.0 803,356 + GFF1061 0.82 +0.1 803,356 + GFF1061 0.82 -0.0 803,356 + GFF1061 0.82 +1.0 803,356 + GFF1061 0.82 -0.6 803,357 - GFF1061 0.82 +0.8 803,357 - GFF1061 0.82 -0.7 803,357 - GFF1061 0.82 +0.2 803,357 - GFF1061 0.82 -0.5 803,357 - GFF1061 0.82 -0.3 803,357 - GFF1061 0.82 +0.3 803,357 - GFF1061 0.82 +0.4 803,357 - GFF1061 0.82 -1.0 803,357 - GFF1061 0.82 -0.7 803,368 - GFF1061 0.82 +1.3 803,368 - GFF1061 0.82 -1.5 803,411 - GFF1061 0.85 -0.4 803,411 - GFF1061 0.85 +0.3 803,438 + GFF1061 0.87 +0.7 803,561 - -0.0 803,594 - +0.2 803,600 + -1.2 803,601 - +0.3 803,602 - -0.1 803,675 + -1.6 803,805 + -0.2 803,891 + -0.2 803,892 - +0.3 803,896 + -0.1 803,897 - +1.3 803,940 - -0.8 803,940 - -1.4 803,940 - -1.4 803,940 - -0.1 804,109 + +0.2 804,110 - -0.2 804,110 - -0.2 804,291 + GFF1062 0.17 -0.0 804,291 + GFF1062 0.17 -0.0 804,292 - GFF1062 0.17 +1.1 804,292 - GFF1062 0.17 +0.1 804,292 - GFF1062 0.17 +1.0 804,538 + GFF1062 0.28 -0.5
Or see this region's nucleotide sequence