Experiment: Ying_Nucleobase14 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1036 and GFF1037 are separated by 515 nucleotides GFF1037 and GFF1038 are separated by 249 nucleotides
GFF1036 - Guanylate kinase (EC 2.7.4.8), at 775,035 to 775,655
GFF1036
GFF1037 - Esterase/lipase, at 776,171 to 776,971
GFF1037
GFF1038 - NADPH:quinone oxidoreductase, at 777,221 to 777,793
GFF1038
Position (kb) 776
777 Strain fitness (log2 ratio) -1
0
1
2 at 775.660 kb on - strand at 775.711 kb on + strand at 775.731 kb on + strand at 775.731 kb on + strand at 775.732 kb on - strand at 775.732 kb on - strand at 775.732 kb on - strand at 775.748 kb on + strand at 775.748 kb on + strand at 775.748 kb on + strand at 775.748 kb on + strand at 775.749 kb on - strand at 775.750 kb on + strand at 775.751 kb on - strand at 775.802 kb on + strand at 775.802 kb on + strand at 775.802 kb on + strand at 775.803 kb on - strand at 775.803 kb on - strand at 775.803 kb on - strand at 775.803 kb on - strand at 775.803 kb on - strand at 775.836 kb on + strand at 775.837 kb on - strand at 775.995 kb on + strand at 775.995 kb on + strand at 775.995 kb on + strand at 775.995 kb on + strand at 775.995 kb on + strand at 775.995 kb on + strand at 775.995 kb on + strand at 775.995 kb on + strand at 775.996 kb on - strand at 775.996 kb on - strand at 775.996 kb on - strand at 775.996 kb on - strand at 775.997 kb on + strand at 775.997 kb on + strand at 775.997 kb on + strand at 775.997 kb on + strand at 775.998 kb on - strand at 775.998 kb on - strand at 775.998 kb on - strand at 776.104 kb on + strand at 776.104 kb on + strand at 776.104 kb on + strand at 776.104 kb on + strand at 776.104 kb on + strand at 776.104 kb on + strand at 776.105 kb on + strand at 776.164 kb on + strand at 776.164 kb on + strand at 776.164 kb on + strand at 776.164 kb on + strand at 776.165 kb on - strand at 776.165 kb on - strand at 776.165 kb on - strand at 776.219 kb on + strand at 776.219 kb on + strand at 776.219 kb on + strand at 776.220 kb on - strand at 776.220 kb on - strand at 776.220 kb on - strand at 776.220 kb on - strand at 776.220 kb on - strand at 776.220 kb on - strand at 776.388 kb on + strand, within GFF1037 at 776.388 kb on + strand, within GFF1037 at 776.388 kb on + strand, within GFF1037 at 776.388 kb on + strand, within GFF1037 at 776.388 kb on + strand, within GFF1037 at 776.388 kb on + strand, within GFF1037 at 776.388 kb on + strand, within GFF1037 at 776.389 kb on - strand, within GFF1037 at 776.389 kb on - strand, within GFF1037 at 776.389 kb on - strand, within GFF1037 at 776.412 kb on + strand, within GFF1037 at 776.412 kb on + strand, within GFF1037 at 776.413 kb on - strand, within GFF1037 at 776.413 kb on - strand, within GFF1037 at 776.502 kb on + strand, within GFF1037 at 776.502 kb on + strand, within GFF1037 at 776.502 kb on + strand, within GFF1037 at 776.502 kb on + strand, within GFF1037 at 776.502 kb on + strand, within GFF1037 at 776.503 kb on - strand, within GFF1037 at 776.503 kb on - strand, within GFF1037 at 776.503 kb on - strand, within GFF1037 at 776.503 kb on - strand, within GFF1037 at 776.503 kb on - strand, within GFF1037 at 776.503 kb on - strand, within GFF1037 at 776.505 kb on + strand, within GFF1037 at 776.609 kb on + strand, within GFF1037 at 777.176 kb on - strand at 777.282 kb on + strand, within GFF1038 at 777.282 kb on + strand, within GFF1038 at 777.282 kb on + strand, within GFF1038 at 777.283 kb on - strand, within GFF1038 at 777.283 kb on - strand, within GFF1038 at 777.283 kb on - strand, within GFF1038 at 777.283 kb on - strand, within GFF1038 at 777.283 kb on - strand, within GFF1038 at 777.283 kb on - strand, within GFF1038 at 777.360 kb on + strand, within GFF1038 at 777.361 kb on - strand, within GFF1038 at 777.643 kb on - strand, within GFF1038 at 777.654 kb on + strand, within GFF1038 at 777.655 kb on - strand, within GFF1038 at 777.655 kb on - strand, within GFF1038 at 777.655 kb on - strand, within GFF1038 at 777.655 kb on - strand, within GFF1038 at 777.783 kb on + strand at 777.783 kb on + strand at 777.784 kb on - strand at 777.784 kb on - strand at 777.784 kb on - strand at 777.784 kb on - strand at 777.784 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1 remove 775,660 - -0.2 775,711 + -1.2 775,731 + -0.0 775,731 + +1.4 775,732 - -1.0 775,732 - -0.3 775,732 - -0.3 775,748 + +0.3 775,748 + +0.5 775,748 + +0.5 775,748 + +0.5 775,749 - -0.9 775,750 + +0.4 775,751 - +0.6 775,802 + +0.3 775,802 + +0.3 775,802 + +0.4 775,803 - +2.0 775,803 - -0.2 775,803 - +0.3 775,803 - -0.0 775,803 - +0.3 775,836 + +0.8 775,837 - -0.2 775,995 + +1.1 775,995 + +0.2 775,995 + +0.3 775,995 + +0.3 775,995 + -0.8 775,995 + +0.8 775,995 + +0.5 775,995 + +0.9 775,996 - -0.2 775,996 - +0.6 775,996 - -0.2 775,996 - +0.1 775,997 + +0.3 775,997 + -0.0 775,997 + +0.4 775,997 + +0.2 775,998 - -0.4 775,998 - +0.4 775,998 - +0.3 776,104 + +0.5 776,104 + -0.2 776,104 + -0.2 776,104 + +0.8 776,104 + +0.9 776,104 + +0.8 776,105 + +0.5 776,164 + +1.2 776,164 + +0.7 776,164 + +0.7 776,164 + +0.5 776,165 - +1.2 776,165 - +1.4 776,165 - -0.1 776,219 + +0.5 776,219 + +0.2 776,219 + +0.5 776,220 - +0.4 776,220 - -0.8 776,220 - +0.2 776,220 - -0.2 776,220 - -0.5 776,220 - +0.9 776,388 + GFF1037 0.27 +0.9 776,388 + GFF1037 0.27 +0.9 776,388 + GFF1037 0.27 -1.6 776,388 + GFF1037 0.27 +0.2 776,388 + GFF1037 0.27 +0.5 776,388 + GFF1037 0.27 +0.2 776,388 + GFF1037 0.27 +1.6 776,389 - GFF1037 0.27 +0.7 776,389 - GFF1037 0.27 +0.5 776,389 - GFF1037 0.27 +2.0 776,412 + GFF1037 0.30 +0.4 776,412 + GFF1037 0.30 +1.0 776,413 - GFF1037 0.30 +0.1 776,413 - GFF1037 0.30 +0.2 776,502 + GFF1037 0.41 +0.5 776,502 + GFF1037 0.41 +0.8 776,502 + GFF1037 0.41 +1.2 776,502 + GFF1037 0.41 +0.4 776,502 + GFF1037 0.41 +0.8 776,503 - GFF1037 0.41 +0.5 776,503 - GFF1037 0.41 +0.2 776,503 - GFF1037 0.41 -0.0 776,503 - GFF1037 0.41 -0.3 776,503 - GFF1037 0.41 +0.2 776,503 - GFF1037 0.41 +0.0 776,505 + GFF1037 0.42 +1.1 776,609 + GFF1037 0.55 +0.8 777,176 - +0.2 777,282 + GFF1038 0.11 -0.3 777,282 + GFF1038 0.11 +0.1 777,282 + GFF1038 0.11 +0.8 777,283 - GFF1038 0.11 -0.1 777,283 - GFF1038 0.11 +0.2 777,283 - GFF1038 0.11 +0.5 777,283 - GFF1038 0.11 -0.3 777,283 - GFF1038 0.11 +0.2 777,283 - GFF1038 0.11 +0.0 777,360 + GFF1038 0.24 +0.2 777,361 - GFF1038 0.24 +0.2 777,643 - GFF1038 0.74 +0.1 777,654 + GFF1038 0.76 -0.9 777,655 - GFF1038 0.76 -0.4 777,655 - GFF1038 0.76 +0.6 777,655 - GFF1038 0.76 -0.3 777,655 - GFF1038 0.76 +0.1 777,783 + +0.1 777,783 + +0.1 777,784 - +0.4 777,784 - -0.9 777,784 - -0.3 777,784 - -0.2 777,784 - +0.2
Or see this region's nucleotide sequence