Strain Fitness in Escherichia fergusonii Becca around EFB2_01575

Experiment: BHIS no phage control with 14 member community

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with 14 member community
1,646,877	-		EFB2_01573	0.73	-1.5
1,646,890	-		EFB2_01573	0.74	-1.0
1,646,949	+		EFB2_01573	0.77	+3.2
1,646,949	+		EFB2_01573	0.77	-1.9
1,646,949	+		EFB2_01573	0.77	-1.8
1,646,949	+		EFB2_01573	0.77	+0.9
1,646,950	-		EFB2_01573	0.77	+0.9
1,646,950	-		EFB2_01573	0.77	-1.3
1,646,950	-		EFB2_01573	0.77	-0.4
1,646,950	-		EFB2_01573	0.77	+0.2
1,646,950	-		EFB2_01573	0.77	+0.8
1,646,950	-		EFB2_01573	0.77	+0.5
1,646,959	+		EFB2_01573	0.78	+3.5
1,646,960	-		EFB2_01573	0.78	-2.0
1,646,971	+		EFB2_01573	0.78	+2.1
1,646,971	+		EFB2_01573	0.78	-0.6
1,647,092	+		EFB2_01573	0.85	-1.0
1,647,092	+		EFB2_01573	0.85	+1.5
1,647,092	+		EFB2_01573	0.85	-0.1
1,647,092	+		EFB2_01573	0.85	+1.3
1,647,093	-		EFB2_01573	0.85	+1.5
1,647,195	+				+1.5
1,647,195	+				-0.7
1,647,195	+				-2.3
1,647,195	+				-2.3
1,647,195	+				-1.0
1,647,195	+				-0.8
1,647,196	-				+1.5
1,647,196	-				+1.1
1,647,196	-				-0.3
1,647,196	-				-1.6
1,647,196	-				+2.5
1,647,196	-				-0.3
1,647,196	-				-1.1
1,647,196	-				-1.1
1,647,198	+				-0.7
1,647,198	+				+2.0
1,647,199	-				+1.9
1,647,199	-				+0.5
1,647,199	-				+1.2
1,647,199	-				-1.8
1,647,318	+				-0.7
1,647,318	+				+0.2
1,647,341	+				+1.4
1,647,341	+				-0.7
1,647,341	+				+1.0
1,647,341	+				+1.0
1,647,341	+				+2.1
1,647,342	-				-1.5
1,647,364	+				-1.1
1,647,364	+				+0.2
1,647,364	+				-1.0
1,647,364	+				+0.3
1,647,365	-				-0.2
1,647,365	-				+0.4
1,647,365	-				-1.0
1,647,450	-		EFB2_01574	0.17	-0.3
1,647,590	+		EFB2_01574	0.45	+0.2
1,647,590	+		EFB2_01574	0.45	-0.5
1,647,590	+		EFB2_01574	0.45	-0.8
1,647,591	-		EFB2_01574	0.45	-1.6
1,647,591	-		EFB2_01574	0.45	-0.3
1,647,591	-		EFB2_01574	0.45	-0.8
1,647,593	-		EFB2_01574	0.46	-1.7
1,647,658	+		EFB2_01574	0.58	-0.1
1,647,658	+		EFB2_01574	0.58	+0.7
1,647,658	+		EFB2_01574	0.58	+0.2
1,647,658	+		EFB2_01574	0.58	+0.6
1,647,659	-		EFB2_01574	0.59	-1.0
1,647,676	+		EFB2_01574	0.62	-2.0
1,647,676	+		EFB2_01574	0.62	-0.3
1,647,677	-		EFB2_01574	0.62	+2.0
1,647,677	-		EFB2_01574	0.62	-0.3
1,647,743	-		EFB2_01574	0.75	-1.8
1,647,778	+		EFB2_01574	0.82	-0.5
1,647,779	-		EFB2_01574	0.83	-0.6
1,647,857	+				+2.5
1,647,857	+				-0.8
1,647,858	-				-2.0
1,647,859	+				-0.3
1,647,859	+				+2.5
1,647,859	+				-1.2
1,647,859	+				+1.7
1,647,859	+				+0.4
1,647,860	-				-2.3
1,647,880	-				+0.6
1,647,880	-				+2.8
1,647,946	+				-2.0
1,647,946	+				+1.1
1,648,121	+		EFB2_01575	0.19	-2.5
1,648,121	+		EFB2_01575	0.19	+1.3
1,648,121	+		EFB2_01575	0.19	-1.7
1,648,121	+		EFB2_01575	0.19	-2.2
1,648,122	-		EFB2_01575	0.19	+0.2
1,648,122	-		EFB2_01575	0.19	-0.1
1,648,122	-		EFB2_01575	0.19	-0.8
1,648,122	-		EFB2_01575	0.19	+0.2
1,648,122	-		EFB2_01575	0.19	-0.5
1,648,122	-		EFB2_01575	0.19	-1.0
1,648,122	-		EFB2_01575	0.19	-1.2
1,648,129	-		EFB2_01575	0.20	-0.7
1,648,156	+		EFB2_01575	0.22	+2.2
1,648,156	+		EFB2_01575	0.22	+1.2
1,648,156	+		EFB2_01575	0.22	+1.9
1,648,156	+		EFB2_01575	0.22	+0.6
1,648,156	+		EFB2_01575	0.22	+0.6
1,648,156	+		EFB2_01575	0.22	+3.5
1,648,157	-		EFB2_01575	0.22	-2.8
1,648,157	-		EFB2_01575	0.22	-0.7
1,648,157	-		EFB2_01575	0.22	-1.8
1,648,157	-		EFB2_01575	0.22	-0.4
1,648,157	-		EFB2_01575	0.22	+1.5
1,648,157	-		EFB2_01575	0.22	-0.8
1,648,158	+		EFB2_01575	0.22	+0.2
1,648,159	-		EFB2_01575	0.22	-1.2
1,648,237	+		EFB2_01575	0.28	+1.8
1,648,246	+		EFB2_01575	0.29	-1.5
1,648,246	+		EFB2_01575	0.29	-0.3
1,648,246	+		EFB2_01575	0.29	-1.0
1,648,246	+		EFB2_01575	0.29	-1.5
1,648,246	+		EFB2_01575	0.29	+0.9
1,648,246	+		EFB2_01575	0.29	+0.8
1,648,246	+		EFB2_01575	0.29	+1.1
1,648,246	+		EFB2_01575	0.29	-2.2
1,648,246	+		EFB2_01575	0.29	-0.5
1,648,247	-		EFB2_01575	0.29	-1.3
1,648,247	-		EFB2_01575	0.29	-1.1
1,648,247	-		EFB2_01575	0.29	-0.6
1,648,247	-		EFB2_01575	0.29	-0.2
1,648,247	-		EFB2_01575	0.29	+1.0
1,648,247	-		EFB2_01575	0.29	-1.0
1,648,247	-		EFB2_01575	0.29	-1.6
1,648,247	-		EFB2_01575	0.29	-1.2
1,648,247	-		EFB2_01575	0.29	-1.2
1,648,247	-		EFB2_01575	0.29	-2.1
1,648,248	+		EFB2_01575	0.29	+1.5
1,648,248	+		EFB2_01575	0.29	+0.5
1,648,248	+		EFB2_01575	0.29	+0.2
1,648,248	+		EFB2_01575	0.29	-1.8
1,648,249	-		EFB2_01575	0.29	-2.2
1,648,249	-		EFB2_01575	0.29	+0.9
1,648,249	-		EFB2_01575	0.29	-0.8
1,648,249	-		EFB2_01575	0.29	+0.8
1,648,249	-		EFB2_01575	0.29	+2.2
1,648,249	-		EFB2_01575	0.29	+1.7
1,648,249	-		EFB2_01575	0.29	+1.3
1,648,267	+		EFB2_01575	0.30	+1.5
1,648,267	+		EFB2_01575	0.30	-2.0
1,648,267	+		EFB2_01575	0.30	+1.3
1,648,268	-		EFB2_01575	0.30	-0.7
1,648,269	+		EFB2_01575	0.30	+1.9
1,648,270	-		EFB2_01575	0.30	-1.0
1,648,270	-		EFB2_01575	0.30	-1.5
1,648,341	+		EFB2_01575	0.36	+1.4
1,648,393	+		EFB2_01575	0.40	+1.7
1,648,393	+		EFB2_01575	0.40	+2.2
1,648,394	-		EFB2_01575	0.40	-0.0
1,648,394	-		EFB2_01575	0.40	+0.2
1,648,394	-		EFB2_01575	0.40	-1.5
1,648,394	-		EFB2_01575	0.40	-0.1
1,648,394	-		EFB2_01575	0.40	-2.0
1,648,530	+		EFB2_01575	0.50	-1.4
1,648,530	+		EFB2_01575	0.50	+1.9
1,648,587	+		EFB2_01575	0.54	+0.9
1,648,587	+		EFB2_01575	0.54	+0.5
1,648,588	-		EFB2_01575	0.54	+1.6
1,648,588	-		EFB2_01575	0.54	+0.9
1,648,691	-		EFB2_01575	0.62	-1.4
1,648,691	-		EFB2_01575	0.62	-0.3
1,648,701	+		EFB2_01575	0.63	+1.3
1,648,701	+		EFB2_01575	0.63	-1.0
1,648,702	-		EFB2_01575	0.63	+0.4
1,648,800	+		EFB2_01575	0.70	+1.5
1,648,806	+		EFB2_01575	0.71	+2.2
1,648,923	+		EFB2_01575	0.79	+0.8
1,648,923	+		EFB2_01575	0.79	+0.5
1,648,923	+		EFB2_01575	0.79	-1.4
1,648,923	+		EFB2_01575	0.79	-1.1
1,649,033	+		EFB2_01575	0.88	+2.0
1,649,101	+				+0.1
1,649,101	+				-0.7
1,649,149	-				+2.5
1,649,160	+				+1.7
1,649,250	+				+3.3
1,649,250	+				-1.1
1,649,251	-				-0.3
1,649,257	+				-1.8
1,649,268	+				+1.9
1,649,268	+				+1.8
1,649,268	+				+2.5
1,649,268	+				-2.4
1,649,269	-				-0.5
1,649,269	-				+1.5
1,649,282	+				-1.8
1,649,282	+				-1.7
1,649,338	+				-1.3
1,649,339	-				-0.6
1,649,452	+				-0.3
1,649,453	-				-2.1
1,649,453	-				+1.3
1,649,479	+				+0.5
1,649,479	+				-1.1
1,649,479	+				+2.5
1,649,479	+				+0.9
1,649,479	+				+2.5
1,649,565	+		EFB2_01576	0.11	+0.5
1,649,565	+		EFB2_01576	0.11	+2.7
1,649,565	+		EFB2_01576	0.11	-2.0
1,649,566	-		EFB2_01576	0.12	+0.2
1,649,566	-		EFB2_01576	0.12	+2.9
1,649,650	+		EFB2_01576	0.15	+1.8
1,649,714	+		EFB2_01576	0.17	+1.7
1,649,732	+		EFB2_01576	0.18	-0.4
1,649,732	+		EFB2_01576	0.18	+2.5
1,649,732	+		EFB2_01576	0.18	+1.9
1,649,768	+		EFB2_01576	0.19	+0.5
1,649,789	+		EFB2_01576	0.20	+1.3
1,649,789	+		EFB2_01576	0.20	-1.9
1,649,790	-		EFB2_01576	0.20	+2.9
1,649,790	-		EFB2_01576	0.20	-1.0
1,649,866	-		EFB2_01576	0.23	+0.7
1,649,894	+		EFB2_01576	0.24	-2.1
1,649,894	+		EFB2_01576	0.24	-1.5
1,649,895	-		EFB2_01576	0.24	-1.6
1,649,902	+		EFB2_01576	0.24	-2.4
1,649,902	+		EFB2_01576	0.24	+2.7
1,649,903	-		EFB2_01576	0.24	-0.1
1,649,903	-		EFB2_01576	0.24	-0.8
1,649,912	-		EFB2_01576	0.24	+0.2
1,649,956	+		EFB2_01576	0.26	-1.1
1,650,029	+		EFB2_01576	0.28	-0.3
1,650,029	+		EFB2_01576	0.28	-1.1
1,650,163	+		EFB2_01576	0.33	+2.5
1,650,163	+		EFB2_01576	0.33	+0.5
1,650,164	-		EFB2_01576	0.33	+1.8
1,650,164	-		EFB2_01576	0.33	+2.3