Strain Fitness in Escherichia fergusonii Becca around EFB2_00856

Experiment: BHIS no phage control with 14 member community

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEFB2_00855 and EFB2_00856 overlap by 4 nucleotidesEFB2_00856 and EFB2_00857 are separated by 11 nucleotidesEFB2_00857 and EFB2_00858 are separated by 15 nucleotides EFB2_00855: EFB2_00855 - Polysialic acid transport protein KpsM, at 877,597 to 878,373 _00855 EFB2_00856: EFB2_00856 - Polysialic acid transport ATP-binding protein KpsT, at 878,370 to 879,041 _00856 EFB2_00857: EFB2_00857 - Glycerol-3-phosphate cytidylyltransferase, at 879,053 to 879,448 _00857 EFB2_00858: EFB2_00858 - hypothetical protein, at 879,464 to 880,699 _00858 Position (kb) 878 879 880Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 877.383 kb on + strandat 877.384 kb on - strandat 877.384 kb on - strandat 877.384 kb on - strandat 877.428 kb on - strandat 877.428 kb on - strandat 877.471 kb on + strandat 877.474 kb on + strandat 877.517 kb on + strandat 877.517 kb on + strandat 877.518 kb on - strandat 877.525 kb on - strandat 877.525 kb on - strandat 877.535 kb on + strandat 877.535 kb on + strandat 877.536 kb on - strandat 877.536 kb on - strandat 877.542 kb on - strandat 877.542 kb on - strandat 877.542 kb on - strandat 877.567 kb on + strandat 877.567 kb on + strandat 877.568 kb on - strandat 877.580 kb on + strandat 877.581 kb on - strandat 877.581 kb on - strandat 877.581 kb on - strandat 877.581 kb on - strandat 877.635 kb on - strandat 877.644 kb on - strandat 877.644 kb on - strandat 877.644 kb on - strandat 877.658 kb on + strandat 877.658 kb on + strandat 877.659 kb on - strandat 877.691 kb on - strand, within EFB2_00855at 877.691 kb on - strand, within EFB2_00855at 877.755 kb on + strand, within EFB2_00855at 877.755 kb on + strand, within EFB2_00855at 877.756 kb on - strand, within EFB2_00855at 877.756 kb on - strand, within EFB2_00855at 877.797 kb on - strand, within EFB2_00855at 877.801 kb on - strand, within EFB2_00855at 877.801 kb on - strand, within EFB2_00855at 877.822 kb on - strand, within EFB2_00855at 877.828 kb on - strand, within EFB2_00855at 877.833 kb on + strand, within EFB2_00855at 877.850 kb on + strand, within EFB2_00855at 877.850 kb on + strand, within EFB2_00855at 877.850 kb on + strand, within EFB2_00855at 877.850 kb on + strand, within EFB2_00855at 877.851 kb on - strand, within EFB2_00855at 877.851 kb on - strand, within EFB2_00855at 877.945 kb on + strand, within EFB2_00855at 877.945 kb on + strand, within EFB2_00855at 877.946 kb on - strand, within EFB2_00855at 877.946 kb on - strand, within EFB2_00855at 877.957 kb on + strand, within EFB2_00855at 877.957 kb on + strand, within EFB2_00855at 877.957 kb on + strand, within EFB2_00855at 877.958 kb on - strand, within EFB2_00855at 877.958 kb on - strand, within EFB2_00855at 877.959 kb on + strand, within EFB2_00855at 877.959 kb on + strand, within EFB2_00855at 877.959 kb on + strand, within EFB2_00855at 877.959 kb on + strand, within EFB2_00855at 877.960 kb on - strand, within EFB2_00855at 877.960 kb on - strand, within EFB2_00855at 877.960 kb on - strand, within EFB2_00855at 877.961 kb on + strand, within EFB2_00855at 877.961 kb on + strand, within EFB2_00855at 877.961 kb on + strand, within EFB2_00855at 877.962 kb on - strand, within EFB2_00855at 877.962 kb on - strand, within EFB2_00855at 877.962 kb on - strand, within EFB2_00855at 877.962 kb on - strand, within EFB2_00855at 877.962 kb on - strand, within EFB2_00855at 877.968 kb on + strand, within EFB2_00855at 877.969 kb on - strand, within EFB2_00855at 877.974 kb on + strand, within EFB2_00855at 877.974 kb on + strand, within EFB2_00855at 877.975 kb on - strand, within EFB2_00855at 878.072 kb on + strand, within EFB2_00855at 878.073 kb on - strand, within EFB2_00855at 878.075 kb on + strand, within EFB2_00855at 878.075 kb on + strand, within EFB2_00855at 878.076 kb on - strand, within EFB2_00855at 878.091 kb on + strand, within EFB2_00855at 878.126 kb on + strand, within EFB2_00855at 878.192 kb on - strand, within EFB2_00855at 878.192 kb on - strand, within EFB2_00855at 878.200 kb on + strand, within EFB2_00855at 878.200 kb on + strand, within EFB2_00855at 878.200 kb on + strand, within EFB2_00855at 878.200 kb on + strand, within EFB2_00855at 878.200 kb on + strand, within EFB2_00855at 878.200 kb on + strand, within EFB2_00855at 878.200 kb on + strand, within EFB2_00855at 878.200 kb on + strand, within EFB2_00855at 878.201 kb on - strand, within EFB2_00855at 878.201 kb on - strand, within EFB2_00855at 878.201 kb on - strand, within EFB2_00855at 878.201 kb on - strand, within EFB2_00855at 878.201 kb on - strand, within EFB2_00855at 878.201 kb on - strand, within EFB2_00855at 878.204 kb on + strand, within EFB2_00855at 878.204 kb on + strand, within EFB2_00855at 878.204 kb on + strand, within EFB2_00855at 878.204 kb on + strand, within EFB2_00855at 878.204 kb on + strand, within EFB2_00855at 878.204 kb on + strand, within EFB2_00855at 878.205 kb on - strand, within EFB2_00855at 878.205 kb on - strand, within EFB2_00855at 878.219 kb on + strand, within EFB2_00855at 878.231 kb on + strand, within EFB2_00855at 878.231 kb on + strand, within EFB2_00855at 878.231 kb on + strand, within EFB2_00855at 878.231 kb on + strand, within EFB2_00855at 878.232 kb on - strand, within EFB2_00855at 878.232 kb on - strand, within EFB2_00855at 878.237 kb on + strand, within EFB2_00855at 878.238 kb on - strand, within EFB2_00855at 878.238 kb on - strand, within EFB2_00855at 878.253 kb on + strand, within EFB2_00855at 878.253 kb on + strand, within EFB2_00855at 878.253 kb on + strand, within EFB2_00855at 878.254 kb on - strand, within EFB2_00855at 878.254 kb on - strand, within EFB2_00855at 878.263 kb on + strand, within EFB2_00855at 878.263 kb on + strand, within EFB2_00855at 878.263 kb on + strand, within EFB2_00855at 878.263 kb on + strand, within EFB2_00855at 878.263 kb on + strand, within EFB2_00855at 878.263 kb on + strand, within EFB2_00855at 878.263 kb on + strand, within EFB2_00855at 878.263 kb on + strand, within EFB2_00855at 878.264 kb on - strand, within EFB2_00855at 878.264 kb on - strand, within EFB2_00855at 878.264 kb on - strand, within EFB2_00855at 878.266 kb on - strand, within EFB2_00855at 878.266 kb on - strand, within EFB2_00855at 878.290 kb on + strand, within EFB2_00855at 878.290 kb on + strand, within EFB2_00855at 878.290 kb on + strand, within EFB2_00855at 878.290 kb on + strand, within EFB2_00855at 878.338 kb on + strandat 878.338 kb on + strandat 878.339 kb on - strandat 878.339 kb on - strandat 878.375 kb on + strandat 878.375 kb on + strandat 878.375 kb on + strandat 878.375 kb on + strandat 878.376 kb on - strandat 878.376 kb on - strandat 878.376 kb on - strandat 878.401 kb on - strandat 878.424 kb on + strandat 878.424 kb on + strandat 878.425 kb on - strandat 878.425 kb on - strandat 878.425 kb on - strandat 878.425 kb on - strandat 878.425 kb on - strandat 878.440 kb on + strand, within EFB2_00856at 878.478 kb on - strand, within EFB2_00856at 878.499 kb on - strand, within EFB2_00856at 878.562 kb on - strand, within EFB2_00856at 878.572 kb on + strand, within EFB2_00856at 878.573 kb on - strand, within EFB2_00856at 878.650 kb on + strand, within EFB2_00856at 878.650 kb on + strand, within EFB2_00856at 878.653 kb on - strand, within EFB2_00856at 878.715 kb on - strand, within EFB2_00856at 878.715 kb on - strand, within EFB2_00856at 878.718 kb on + strand, within EFB2_00856at 878.719 kb on - strand, within EFB2_00856at 878.754 kb on - strand, within EFB2_00856at 878.779 kb on + strand, within EFB2_00856at 878.793 kb on - strand, within EFB2_00856at 878.802 kb on + strand, within EFB2_00856at 878.805 kb on + strand, within EFB2_00856at 878.805 kb on + strand, within EFB2_00856at 878.806 kb on - strand, within EFB2_00856at 878.806 kb on - strand, within EFB2_00856at 878.806 kb on - strand, within EFB2_00856at 878.807 kb on + strand, within EFB2_00856at 878.808 kb on - strand, within EFB2_00856at 878.821 kb on + strand, within EFB2_00856at 878.951 kb on - strand, within EFB2_00856at 878.954 kb on + strand, within EFB2_00856at 879.088 kb on - strandat 879.096 kb on + strand, within EFB2_00857at 879.097 kb on - strand, within EFB2_00857at 879.105 kb on + strand, within EFB2_00857at 879.110 kb on - strand, within EFB2_00857at 879.110 kb on - strand, within EFB2_00857at 879.295 kb on + strand, within EFB2_00857at 879.316 kb on + strand, within EFB2_00857at 879.370 kb on - strand, within EFB2_00857at 879.421 kb on - strandat 879.537 kb on + strandat 879.541 kb on - strandat 879.541 kb on - strandat 879.641 kb on + strand, within EFB2_00858at 879.677 kb on + strand, within EFB2_00858at 879.677 kb on + strand, within EFB2_00858at 879.678 kb on - strand, within EFB2_00858at 879.678 kb on - strand, within EFB2_00858at 879.679 kb on + strand, within EFB2_00858at 879.679 kb on + strand, within EFB2_00858at 879.679 kb on + strand, within EFB2_00858at 879.679 kb on + strand, within EFB2_00858at 879.680 kb on - strand, within EFB2_00858at 879.680 kb on - strand, within EFB2_00858at 879.681 kb on + strand, within EFB2_00858at 879.682 kb on - strand, within EFB2_00858at 879.718 kb on - strand, within EFB2_00858at 879.731 kb on - strand, within EFB2_00858at 879.740 kb on + strand, within EFB2_00858at 879.798 kb on + strand, within EFB2_00858at 879.802 kb on + strand, within EFB2_00858at 879.802 kb on + strand, within EFB2_00858at 879.889 kb on - strand, within EFB2_00858at 879.917 kb on + strand, within EFB2_00858at 879.925 kb on + strand, within EFB2_00858at 879.928 kb on - strand, within EFB2_00858at 879.942 kb on - strand, within EFB2_00858at 879.964 kb on - strand, within EFB2_00858at 879.987 kb on + strand, within EFB2_00858at 879.987 kb on + strand, within EFB2_00858at 879.987 kb on + strand, within EFB2_00858at 879.987 kb on + strand, within EFB2_00858at 879.987 kb on + strand, within EFB2_00858at 879.988 kb on - strand, within EFB2_00858at 879.989 kb on + strand, within EFB2_00858at 879.989 kb on + strand, within EFB2_00858at 879.990 kb on - strand, within EFB2_00858

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS no phage control with 14 member community
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877,383 + -2.1
877,384 - +0.3
877,384 - +1.9
877,384 - -0.3
877,428 - +1.0
877,428 - -1.0
877,471 + -2.2
877,474 + +1.7
877,517 + -2.2
877,517 + -1.1
877,518 - +1.2
877,525 - -2.2
877,525 - +0.7
877,535 + -2.5
877,535 + -2.6
877,536 - +0.5
877,536 - -2.7
877,542 - -0.5
877,542 - +0.4
877,542 - -0.5
877,567 + -0.5
877,567 + +2.2
877,568 - -0.8
877,580 + -0.7
877,581 - +0.6
877,581 - +0.6
877,581 - -2.4
877,581 - -0.0
877,635 - -0.4
877,644 - +0.2
877,644 - -0.3
877,644 - +0.4
877,658 + +0.6
877,658 + +0.6
877,659 - +0.9
877,691 - EFB2_00855 0.12 +0.7
877,691 - EFB2_00855 0.12 -0.2
877,755 + EFB2_00855 0.20 +1.7
877,755 + EFB2_00855 0.20 +0.7
877,756 - EFB2_00855 0.20 -0.5
877,756 - EFB2_00855 0.20 -0.1
877,797 - EFB2_00855 0.26 -2.5
877,801 - EFB2_00855 0.26 -1.0
877,801 - EFB2_00855 0.26 -0.3
877,822 - EFB2_00855 0.29 -0.8
877,828 - EFB2_00855 0.30 +1.7
877,833 + EFB2_00855 0.30 -2.0
877,850 + EFB2_00855 0.33 -0.7
877,850 + EFB2_00855 0.33 -1.2
877,850 + EFB2_00855 0.33 -0.6
877,850 + EFB2_00855 0.33 -0.0
877,851 - EFB2_00855 0.33 +0.8
877,851 - EFB2_00855 0.33 -1.2
877,945 + EFB2_00855 0.45 +0.2
877,945 + EFB2_00855 0.45 -2.8
877,946 - EFB2_00855 0.45 -0.8
877,946 - EFB2_00855 0.45 +1.1
877,957 + EFB2_00855 0.46 +0.4
877,957 + EFB2_00855 0.46 -2.9
877,957 + EFB2_00855 0.46 -2.5
877,958 - EFB2_00855 0.46 +0.4
877,958 - EFB2_00855 0.46 +0.7
877,959 + EFB2_00855 0.47 -0.5
877,959 + EFB2_00855 0.47 -2.9
877,959 + EFB2_00855 0.47 -1.6
877,959 + EFB2_00855 0.47 +2.5
877,960 - EFB2_00855 0.47 -3.4
877,960 - EFB2_00855 0.47 +1.2
877,960 - EFB2_00855 0.47 +0.6
877,961 + EFB2_00855 0.47 -2.7
877,961 + EFB2_00855 0.47 -1.7
877,961 + EFB2_00855 0.47 -0.2
877,962 - EFB2_00855 0.47 -1.8
877,962 - EFB2_00855 0.47 -0.6
877,962 - EFB2_00855 0.47 -0.6
877,962 - EFB2_00855 0.47 -0.9
877,962 - EFB2_00855 0.47 -0.5
877,968 + EFB2_00855 0.48 -1.3
877,969 - EFB2_00855 0.48 -0.9
877,974 + EFB2_00855 0.49 -2.4
877,974 + EFB2_00855 0.49 -3.0
877,975 - EFB2_00855 0.49 -0.7
878,072 + EFB2_00855 0.61 +1.7
878,073 - EFB2_00855 0.61 -0.8
878,075 + EFB2_00855 0.62 -1.0
878,075 + EFB2_00855 0.62 +0.0
878,076 - EFB2_00855 0.62 -0.8
878,091 + EFB2_00855 0.64 +1.1
878,126 + EFB2_00855 0.68 +0.6
878,192 - EFB2_00855 0.77 -1.4
878,192 - EFB2_00855 0.77 -0.1
878,200 + EFB2_00855 0.78 -1.8
878,200 + EFB2_00855 0.78 -0.0
878,200 + EFB2_00855 0.78 -0.1
878,200 + EFB2_00855 0.78 -0.0
878,200 + EFB2_00855 0.78 +0.1
878,200 + EFB2_00855 0.78 -1.6
878,200 + EFB2_00855 0.78 +0.6
878,200 + EFB2_00855 0.78 -2.0
878,201 - EFB2_00855 0.78 +0.8
878,201 - EFB2_00855 0.78 -0.4
878,201 - EFB2_00855 0.78 -0.5
878,201 - EFB2_00855 0.78 +1.2
878,201 - EFB2_00855 0.78 -1.0
878,201 - EFB2_00855 0.78 +1.8
878,204 + EFB2_00855 0.78 -3.3
878,204 + EFB2_00855 0.78 +2.7
878,204 + EFB2_00855 0.78 -1.2
878,204 + EFB2_00855 0.78 +0.6
878,204 + EFB2_00855 0.78 -0.3
878,204 + EFB2_00855 0.78 -0.6
878,205 - EFB2_00855 0.78 -2.3
878,205 - EFB2_00855 0.78 +0.7
878,219 + EFB2_00855 0.80 +1.0
878,231 + EFB2_00855 0.82 -0.4
878,231 + EFB2_00855 0.82 -0.4
878,231 + EFB2_00855 0.82 +0.5
878,231 + EFB2_00855 0.82 -3.5
878,232 - EFB2_00855 0.82 +0.1
878,232 - EFB2_00855 0.82 -1.6
878,237 + EFB2_00855 0.82 +0.3
878,238 - EFB2_00855 0.82 +0.5
878,238 - EFB2_00855 0.82 -1.1
878,253 + EFB2_00855 0.84 +0.6
878,253 + EFB2_00855 0.84 -1.0
878,253 + EFB2_00855 0.84 -1.8
878,254 - EFB2_00855 0.85 +0.2
878,254 - EFB2_00855 0.85 -0.9
878,263 + EFB2_00855 0.86 +0.6
878,263 + EFB2_00855 0.86 -2.3
878,263 + EFB2_00855 0.86 +0.2
878,263 + EFB2_00855 0.86 -2.6
878,263 + EFB2_00855 0.86 +1.0
878,263 + EFB2_00855 0.86 -0.8
878,263 + EFB2_00855 0.86 -1.2
878,263 + EFB2_00855 0.86 -2.6
878,264 - EFB2_00855 0.86 -0.6
878,264 - EFB2_00855 0.86 -0.1
878,264 - EFB2_00855 0.86 -0.6
878,266 - EFB2_00855 0.86 +1.0
878,266 - EFB2_00855 0.86 -0.5
878,290 + EFB2_00855 0.89 -1.0
878,290 + EFB2_00855 0.89 +1.1
878,290 + EFB2_00855 0.89 -0.2
878,290 + EFB2_00855 0.89 +0.0
878,338 + +0.1
878,338 + +0.0
878,339 - +0.4
878,339 - +0.8
878,375 + -0.3
878,375 + -1.2
878,375 + -1.2
878,375 + -1.8
878,376 - +0.6
878,376 - -1.0
878,376 - -1.6
878,401 - +0.4
878,424 + +1.2
878,424 + -0.7
878,425 - +0.5
878,425 - +0.6
878,425 - -0.1
878,425 - -0.1
878,425 - +0.8
878,440 + EFB2_00856 0.10 -0.5
878,478 - EFB2_00856 0.16 -1.4
878,499 - EFB2_00856 0.19 -0.7
878,562 - EFB2_00856 0.29 +0.1
878,572 + EFB2_00856 0.30 -1.8
878,573 - EFB2_00856 0.30 -0.5
878,650 + EFB2_00856 0.42 +0.3
878,650 + EFB2_00856 0.42 -0.2
878,653 - EFB2_00856 0.42 -0.6
878,715 - EFB2_00856 0.51 -2.3
878,715 - EFB2_00856 0.51 -0.0
878,718 + EFB2_00856 0.52 +1.0
878,719 - EFB2_00856 0.52 +1.3
878,754 - EFB2_00856 0.57 -1.4
878,779 + EFB2_00856 0.61 -0.5
878,793 - EFB2_00856 0.63 -1.5
878,802 + EFB2_00856 0.64 +2.3
878,805 + EFB2_00856 0.65 -2.0
878,805 + EFB2_00856 0.65 -1.6
878,806 - EFB2_00856 0.65 -4.8
878,806 - EFB2_00856 0.65 -1.8
878,806 - EFB2_00856 0.65 -0.2
878,807 + EFB2_00856 0.65 -2.9
878,808 - EFB2_00856 0.65 -3.1
878,821 + EFB2_00856 0.67 +1.2
878,951 - EFB2_00856 0.86 -0.2
878,954 + EFB2_00856 0.87 -0.1
879,088 - -3.5
879,096 + EFB2_00857 0.11 -0.6
879,097 - EFB2_00857 0.11 -3.9
879,105 + EFB2_00857 0.13 +0.4
879,110 - EFB2_00857 0.14 -4.2
879,110 - EFB2_00857 0.14 +1.0
879,295 + EFB2_00857 0.61 +0.2
879,316 + EFB2_00857 0.66 +2.3
879,370 - EFB2_00857 0.80 +0.1
879,421 - +0.1
879,537 + +0.4
879,541 - +0.8
879,541 - -0.3
879,641 + EFB2_00858 0.14 -0.3
879,677 + EFB2_00858 0.17 +1.2
879,677 + EFB2_00858 0.17 +0.9
879,678 - EFB2_00858 0.17 -0.3
879,678 - EFB2_00858 0.17 +0.6
879,679 + EFB2_00858 0.17 +1.7
879,679 + EFB2_00858 0.17 +1.5
879,679 + EFB2_00858 0.17 -1.5
879,679 + EFB2_00858 0.17 +0.8
879,680 - EFB2_00858 0.17 -2.1
879,680 - EFB2_00858 0.17 +0.0
879,681 + EFB2_00858 0.18 -2.0
879,682 - EFB2_00858 0.18 +1.0
879,718 - EFB2_00858 0.21 -1.3
879,731 - EFB2_00858 0.22 +0.8
879,740 + EFB2_00858 0.22 -0.3
879,798 + EFB2_00858 0.27 +1.6
879,802 + EFB2_00858 0.27 +1.0
879,802 + EFB2_00858 0.27 -0.5
879,889 - EFB2_00858 0.34 -1.2
879,917 + EFB2_00858 0.37 +0.2
879,925 + EFB2_00858 0.37 +0.7
879,928 - EFB2_00858 0.38 -0.7
879,942 - EFB2_00858 0.39 -1.1
879,964 - EFB2_00858 0.40 +1.3
879,987 + EFB2_00858 0.42 +0.0
879,987 + EFB2_00858 0.42 +0.8
879,987 + EFB2_00858 0.42 -1.6
879,987 + EFB2_00858 0.42 -2.3
879,987 + EFB2_00858 0.42 +2.3
879,988 - EFB2_00858 0.42 +3.8
879,989 + EFB2_00858 0.42 +1.4
879,989 + EFB2_00858 0.42 -0.4
879,990 - EFB2_00858 0.43 +1.7

Or see this region's nucleotide sequence