Experiment: mixed community control; LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt COO64_RS21835 and COO64_RS21840 are separated by 6 nucleotides COO64_RS21840 and recQ are separated by 118 nucleotides recQ and COO64_RS21850 are separated by 245 nucleotides COO64_RS21850 and COO64_RS21855 are separated by 10 nucleotides
COO64_RS21835: COO64_RS21835 - patatin-like phospholipase family protein, at 132,640 to 134,829
_RS21835
COO64_RS21840: COO64_RS21840 - MarR family transcriptional regulator, at 134,836 to 135,270
_RS21840
COO64_RS21845: recQ - DNA helicase RecQ, at 135,389 to 137,527
recQ
COO64_RS21850: COO64_RS21850 - YecA family protein, at 137,773 to 138,360
_RS21850
COO64_RS21855: COO64_RS21855 - YbaN family protein, at 138,371 to 138,736
_RS21855
Position (kb) 135
136
137
138 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 134.593 kb on + strand, within COO64_RS21835 at 134.593 kb on + strand, within COO64_RS21835 at 134.593 kb on + strand, within COO64_RS21835 at 134.593 kb on + strand, within COO64_RS21835 at 134.593 kb on + strand, within COO64_RS21835 at 134.594 kb on - strand, within COO64_RS21835 at 134.596 kb on + strand, within COO64_RS21835 at 134.597 kb on - strand, within COO64_RS21835 at 134.620 kb on + strand at 134.644 kb on + strand at 134.644 kb on + strand at 134.644 kb on + strand at 134.644 kb on + strand at 134.645 kb on - strand at 134.707 kb on + strand at 134.707 kb on + strand at 134.707 kb on + strand at 134.708 kb on - strand at 134.708 kb on - strand at 134.708 kb on - strand at 134.771 kb on - strand at 134.803 kb on + strand at 134.803 kb on + strand at 134.803 kb on + strand at 134.803 kb on + strand at 134.803 kb on + strand at 134.803 kb on + strand at 134.804 kb on - strand at 134.804 kb on - strand at 135.031 kb on + strand, within COO64_RS21840 at 135.270 kb on + strand at 135.270 kb on + strand at 135.271 kb on - strand at 135.293 kb on - strand at 135.296 kb on + strand at 135.297 kb on - strand at 135.297 kb on - strand at 135.307 kb on + strand at 135.339 kb on + strand at 135.340 kb on - strand at 135.340 kb on - strand at 135.366 kb on + strand at 135.366 kb on + strand at 135.367 kb on - strand at 135.368 kb on + strand at 135.368 kb on + strand at 135.369 kb on - strand at 135.369 kb on - strand at 135.369 kb on - strand at 135.391 kb on - strand at 135.391 kb on - strand at 135.391 kb on - strand at 135.391 kb on - strand at 135.429 kb on + strand at 135.429 kb on + strand at 135.430 kb on - strand at 135.430 kb on - strand at 135.521 kb on + strand at 135.521 kb on + strand at 135.522 kb on - strand at 135.522 kb on - strand at 135.606 kb on + strand, within recQ at 135.606 kb on + strand, within recQ at 135.606 kb on + strand, within recQ at 135.606 kb on + strand, within recQ at 135.607 kb on - strand, within recQ at 135.827 kb on + strand, within recQ at 135.827 kb on + strand, within recQ at 135.828 kb on - strand, within recQ at 135.828 kb on - strand, within recQ at 135.864 kb on + strand, within recQ at 135.864 kb on + strand, within recQ at 135.864 kb on + strand, within recQ at 135.864 kb on + strand, within recQ at 135.864 kb on + strand, within recQ at 135.864 kb on + strand, within recQ at 135.865 kb on - strand, within recQ at 135.865 kb on - strand, within recQ at 135.865 kb on - strand, within recQ at 135.865 kb on - strand, within recQ at 135.865 kb on - strand, within recQ at 135.865 kb on - strand, within recQ at 136.084 kb on - strand, within recQ at 136.084 kb on - strand, within recQ at 136.279 kb on - strand, within recQ at 136.386 kb on + strand, within recQ at 136.386 kb on + strand, within recQ at 136.386 kb on + strand, within recQ at 136.386 kb on + strand, within recQ at 136.386 kb on + strand, within recQ at 136.387 kb on - strand, within recQ at 136.387 kb on - strand, within recQ at 136.387 kb on - strand, within recQ at 136.387 kb on - strand, within recQ at 136.387 kb on - strand, within recQ at 136.533 kb on + strand, within recQ at 136.590 kb on + strand, within recQ at 136.590 kb on + strand, within recQ at 136.590 kb on + strand, within recQ at 136.590 kb on + strand, within recQ at 136.591 kb on - strand, within recQ at 136.593 kb on + strand, within recQ at 136.593 kb on + strand, within recQ at 136.594 kb on - strand, within recQ at 136.594 kb on - strand, within recQ at 136.755 kb on + strand, within recQ at 136.755 kb on + strand, within recQ at 136.756 kb on - strand, within recQ at 136.788 kb on + strand, within recQ at 136.789 kb on - strand, within recQ at 136.789 kb on - strand, within recQ at 136.789 kb on - strand, within recQ at 136.789 kb on - strand, within recQ at 136.789 kb on - strand, within recQ at 136.789 kb on - strand, within recQ at 136.789 kb on - strand, within recQ at 136.827 kb on + strand, within recQ at 136.827 kb on + strand, within recQ at 136.828 kb on - strand, within recQ at 136.828 kb on - strand, within recQ at 136.908 kb on + strand, within recQ at 136.908 kb on + strand, within recQ at 136.908 kb on + strand, within recQ at 136.909 kb on - strand, within recQ at 136.909 kb on - strand, within recQ at 136.909 kb on - strand, within recQ at 137.067 kb on + strand, within recQ at 137.068 kb on - strand, within recQ at 137.100 kb on - strand, within recQ at 137.193 kb on + strand, within recQ at 137.194 kb on - strand, within recQ at 137.221 kb on + strand, within recQ at 137.222 kb on - strand, within recQ at 137.417 kb on + strand at 137.660 kb on + strand at 137.660 kb on + strand at 137.660 kb on + strand at 137.661 kb on - strand at 137.661 kb on - strand at 137.661 kb on - strand at 137.662 kb on + strand at 137.663 kb on - strand at 137.697 kb on + strand at 137.697 kb on + strand at 137.697 kb on + strand at 137.753 kb on - strand at 137.763 kb on + strand at 137.764 kb on - strand at 137.764 kb on - strand at 137.848 kb on + strand, within COO64_RS21850 at 137.848 kb on + strand, within COO64_RS21850 at 137.849 kb on - strand, within COO64_RS21850 at 137.947 kb on + strand, within COO64_RS21850 at 137.947 kb on + strand, within COO64_RS21850 at 137.947 kb on + strand, within COO64_RS21850 at 137.947 kb on + strand, within COO64_RS21850 at 137.947 kb on + strand, within COO64_RS21850 at 137.947 kb on + strand, within COO64_RS21850 at 137.947 kb on + strand, within COO64_RS21850 at 137.948 kb on - strand, within COO64_RS21850 at 137.948 kb on - strand, within COO64_RS21850 at 137.948 kb on - strand, within COO64_RS21850 at 138.122 kb on + strand, within COO64_RS21850 at 138.122 kb on + strand, within COO64_RS21850 at 138.122 kb on + strand, within COO64_RS21850 at 138.123 kb on - strand, within COO64_RS21850 at 138.123 kb on - strand, within COO64_RS21850 at 138.301 kb on + strand, within COO64_RS21850 at 138.301 kb on + strand, within COO64_RS21850 at 138.301 kb on + strand, within COO64_RS21850 at 138.301 kb on + strand, within COO64_RS21850 at 138.302 kb on - strand at 138.302 kb on - strand at 138.302 kb on - strand at 138.302 kb on - strand at 138.377 kb on + strand at 138.378 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction mixed community control; LB remove 134,593 + COO64_RS21835 0.89 +0.2 134,593 + COO64_RS21835 0.89 +0.6 134,593 + COO64_RS21835 0.89 -0.8 134,593 + COO64_RS21835 0.89 +0.3 134,593 + COO64_RS21835 0.89 -0.3 134,594 - COO64_RS21835 0.89 -0.2 134,596 + COO64_RS21835 0.89 +0.5 134,597 - COO64_RS21835 0.89 -0.5 134,620 + -1.3 134,644 + +0.6 134,644 + -0.5 134,644 + -0.6 134,644 + +0.2 134,645 - +0.2 134,707 + -0.7 134,707 + +0.3 134,707 + +0.1 134,708 - +0.3 134,708 - +0.4 134,708 - -0.4 134,771 - +1.1 134,803 + -0.1 134,803 + -0.3 134,803 + -2.1 134,803 + -0.1 134,803 + +0.4 134,803 + +0.2 134,804 - -0.8 134,804 - -2.3 135,031 + COO64_RS21840 0.45 +0.6 135,270 + -0.6 135,270 + +1.1 135,271 - -0.2 135,293 - +0.2 135,296 + -0.5 135,297 - +1.1 135,297 - -0.1 135,307 + -0.3 135,339 + -1.3 135,340 - +1.1 135,340 - -1.1 135,366 + +0.5 135,366 + -0.8 135,367 - +0.4 135,368 + +0.2 135,368 + +1.0 135,369 - -0.6 135,369 - -0.9 135,369 - -0.5 135,391 - +0.1 135,391 - -0.3 135,391 - +0.1 135,391 - +0.9 135,429 + -0.4 135,429 + +0.8 135,430 - +0.4 135,430 - +1.2 135,521 + +0.3 135,521 + -1.1 135,522 - +0.0 135,522 - -0.4 135,606 + recQ COO64_RS21845 0.10 -0.8 135,606 + recQ COO64_RS21845 0.10 -1.5 135,606 + recQ COO64_RS21845 0.10 -0.3 135,606 + recQ COO64_RS21845 0.10 -0.7 135,607 - recQ COO64_RS21845 0.10 +0.9 135,827 + recQ COO64_RS21845 0.20 -1.5 135,827 + recQ COO64_RS21845 0.20 -1.2 135,828 - recQ COO64_RS21845 0.21 -0.5 135,828 - recQ COO64_RS21845 0.21 +0.5 135,864 + recQ COO64_RS21845 0.22 -1.1 135,864 + recQ COO64_RS21845 0.22 -1.1 135,864 + recQ COO64_RS21845 0.22 +0.4 135,864 + recQ COO64_RS21845 0.22 -0.8 135,864 + recQ COO64_RS21845 0.22 -0.3 135,864 + recQ COO64_RS21845 0.22 +0.5 135,865 - recQ COO64_RS21845 0.22 -1.9 135,865 - recQ COO64_RS21845 0.22 -0.9 135,865 - recQ COO64_RS21845 0.22 -0.5 135,865 - recQ COO64_RS21845 0.22 -0.6 135,865 - recQ COO64_RS21845 0.22 -0.3 135,865 - recQ COO64_RS21845 0.22 +0.2 136,084 - recQ COO64_RS21845 0.32 +0.4 136,084 - recQ COO64_RS21845 0.32 +0.3 136,279 - recQ COO64_RS21845 0.42 -0.3 136,386 + recQ COO64_RS21845 0.47 -0.8 136,386 + recQ COO64_RS21845 0.47 -0.2 136,386 + recQ COO64_RS21845 0.47 -1.1 136,386 + recQ COO64_RS21845 0.47 +0.4 136,386 + recQ COO64_RS21845 0.47 +0.1 136,387 - recQ COO64_RS21845 0.47 -1.5 136,387 - recQ COO64_RS21845 0.47 -1.0 136,387 - recQ COO64_RS21845 0.47 -0.7 136,387 - recQ COO64_RS21845 0.47 -0.1 136,387 - recQ COO64_RS21845 0.47 -1.1 136,533 + recQ COO64_RS21845 0.53 -0.6 136,590 + recQ COO64_RS21845 0.56 +0.8 136,590 + recQ COO64_RS21845 0.56 -2.4 136,590 + recQ COO64_RS21845 0.56 +0.6 136,590 + recQ COO64_RS21845 0.56 +0.8 136,591 - recQ COO64_RS21845 0.56 -1.8 136,593 + recQ COO64_RS21845 0.56 +0.7 136,593 + recQ COO64_RS21845 0.56 -0.0 136,594 - recQ COO64_RS21845 0.56 +0.9 136,594 - recQ COO64_RS21845 0.56 +0.4 136,755 + recQ COO64_RS21845 0.64 +0.7 136,755 + recQ COO64_RS21845 0.64 +1.9 136,756 - recQ COO64_RS21845 0.64 -0.9 136,788 + recQ COO64_RS21845 0.65 -0.9 136,789 - recQ COO64_RS21845 0.65 -1.0 136,789 - recQ COO64_RS21845 0.65 +1.1 136,789 - recQ COO64_RS21845 0.65 -0.4 136,789 - recQ COO64_RS21845 0.65 +0.6 136,789 - recQ COO64_RS21845 0.65 +0.2 136,789 - recQ COO64_RS21845 0.65 -0.7 136,789 - recQ COO64_RS21845 0.65 +1.1 136,827 + recQ COO64_RS21845 0.67 -1.2 136,827 + recQ COO64_RS21845 0.67 -0.1 136,828 - recQ COO64_RS21845 0.67 -0.2 136,828 - recQ COO64_RS21845 0.67 +0.7 136,908 + recQ COO64_RS21845 0.71 -1.5 136,908 + recQ COO64_RS21845 0.71 -0.2 136,908 + recQ COO64_RS21845 0.71 -0.1 136,909 - recQ COO64_RS21845 0.71 +0.6 136,909 - recQ COO64_RS21845 0.71 +0.4 136,909 - recQ COO64_RS21845 0.71 -2.9 137,067 + recQ COO64_RS21845 0.78 +1.0 137,068 - recQ COO64_RS21845 0.78 +0.7 137,100 - recQ COO64_RS21845 0.80 +0.3 137,193 + recQ COO64_RS21845 0.84 -0.9 137,194 - recQ COO64_RS21845 0.84 -1.1 137,221 + recQ COO64_RS21845 0.86 +1.1 137,222 - recQ COO64_RS21845 0.86 +0.7 137,417 + -1.1 137,660 + -0.6 137,660 + -0.9 137,660 + -0.8 137,661 - -1.1 137,661 - -0.4 137,661 - +2.0 137,662 + +0.1 137,663 - -1.6 137,697 + -0.4 137,697 + -1.9 137,697 + +0.4 137,753 - -0.3 137,763 + -1.3 137,764 - +0.8 137,764 - -0.8 137,848 + COO64_RS21850 0.13 -0.6 137,848 + COO64_RS21850 0.13 +0.2 137,849 - COO64_RS21850 0.13 +1.4 137,947 + COO64_RS21850 0.30 -0.9 137,947 + COO64_RS21850 0.30 -0.9 137,947 + COO64_RS21850 0.30 -0.9 137,947 + COO64_RS21850 0.30 -0.3 137,947 + COO64_RS21850 0.30 -0.9 137,947 + COO64_RS21850 0.30 -1.2 137,947 + COO64_RS21850 0.30 -0.4 137,948 - COO64_RS21850 0.30 -0.4 137,948 - COO64_RS21850 0.30 +1.1 137,948 - COO64_RS21850 0.30 -0.9 138,122 + COO64_RS21850 0.59 -1.4 138,122 + COO64_RS21850 0.59 -1.2 138,122 + COO64_RS21850 0.59 +0.1 138,123 - COO64_RS21850 0.60 +0.4 138,123 - COO64_RS21850 0.60 +0.7 138,301 + COO64_RS21850 0.90 +1.1 138,301 + COO64_RS21850 0.90 -1.2 138,301 + COO64_RS21850 0.90 +0.6 138,301 + COO64_RS21850 0.90 -0.2 138,302 - +0.5 138,302 - -1.5 138,302 - -0.0 138,302 - -1.9 138,377 + +0.2 138,378 - -0.4
Or see this region's nucleotide sequence