Strain Fitness in Pseudomonas sp. SVBP6 around COO64_RS05890

Experiment: mixed community control; LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCOO64_RS05880 and COO64_RS05885 overlap by 4 nucleotidesCOO64_RS05885 and COO64_RS05890 are separated by 70 nucleotidesCOO64_RS05890 and COO64_RS05895 are separated by 143 nucleotidesCOO64_RS05895 and COO64_RS05900 overlap by 33 nucleotides COO64_RS05880: COO64_RS05880 - biopolymer transporter ExbD, at 691,657 to 692,088 _RS05880 COO64_RS05885: COO64_RS05885 - MotA/TolQ/ExbB proton channel family protein, at 692,085 to 692,720 _RS05885 COO64_RS05890: COO64_RS05890 - DNA internalization-related competence protein ComEC/Rec2, at 692,791 to 695,013 _RS05890 COO64_RS05895: COO64_RS05895 - DUF2062 domain-containing protein, at 695,157 to 695,699 _RS05895 COO64_RS05900: COO64_RS05900 - ABC transporter permease, at 695,667 to 696,446 _RS05900 Position (kb) 692 693 694 695 696Strain fitness (log2 ratio) -2 -1 0 1 2at 692.405 kb on - strand, within COO64_RS05885at 692.405 kb on - strand, within COO64_RS05885at 692.724 kb on - strandat 692.724 kb on - strandat 692.724 kb on - strandat 692.724 kb on - strandat 692.754 kb on - strandat 692.758 kb on + strandat 692.758 kb on + strandat 692.758 kb on + strandat 692.759 kb on - strandat 692.759 kb on - strandat 692.759 kb on - strandat 692.891 kb on + strandat 692.891 kb on + strandat 692.892 kb on - strandat 692.957 kb on + strandat 692.958 kb on - strandat 693.177 kb on + strand, within COO64_RS05890at 693.177 kb on + strand, within COO64_RS05890at 693.178 kb on - strand, within COO64_RS05890at 693.178 kb on - strand, within COO64_RS05890at 693.178 kb on - strand, within COO64_RS05890at 693.178 kb on - strand, within COO64_RS05890at 693.178 kb on - strand, within COO64_RS05890at 693.178 kb on - strand, within COO64_RS05890at 693.262 kb on + strand, within COO64_RS05890at 693.262 kb on + strand, within COO64_RS05890at 693.262 kb on + strand, within COO64_RS05890at 693.263 kb on - strand, within COO64_RS05890at 693.263 kb on - strand, within COO64_RS05890at 693.263 kb on - strand, within COO64_RS05890at 693.263 kb on - strand, within COO64_RS05890at 693.304 kb on + strand, within COO64_RS05890at 693.304 kb on + strand, within COO64_RS05890at 693.304 kb on + strand, within COO64_RS05890at 693.467 kb on + strand, within COO64_RS05890at 693.467 kb on + strand, within COO64_RS05890at 693.467 kb on + strand, within COO64_RS05890at 693.467 kb on + strand, within COO64_RS05890at 693.468 kb on - strand, within COO64_RS05890at 693.786 kb on - strand, within COO64_RS05890at 693.996 kb on + strand, within COO64_RS05890at 694.202 kb on + strand, within COO64_RS05890at 694.203 kb on - strand, within COO64_RS05890at 694.301 kb on + strand, within COO64_RS05890at 694.301 kb on + strand, within COO64_RS05890at 694.301 kb on + strand, within COO64_RS05890at 694.301 kb on + strand, within COO64_RS05890at 694.302 kb on - strand, within COO64_RS05890at 694.302 kb on - strand, within COO64_RS05890at 694.302 kb on - strand, within COO64_RS05890at 694.302 kb on - strand, within COO64_RS05890at 694.360 kb on - strand, within COO64_RS05890at 694.417 kb on + strand, within COO64_RS05890at 694.417 kb on + strand, within COO64_RS05890at 694.682 kb on - strand, within COO64_RS05890at 694.682 kb on - strand, within COO64_RS05890at 694.682 kb on - strand, within COO64_RS05890at 694.791 kb on + strandat 695.052 kb on + strandat 695.052 kb on + strandat 695.052 kb on + strandat 695.052 kb on + strandat 695.053 kb on - strandat 695.053 kb on - strandat 695.053 kb on - strandat 695.078 kb on - strandat 695.081 kb on + strandat 695.081 kb on + strandat 695.082 kb on - strandat 695.082 kb on - strandat 695.082 kb on - strandat 695.112 kb on + strandat 695.112 kb on + strandat 695.113 kb on - strandat 695.125 kb on + strandat 695.125 kb on + strandat 695.125 kb on + strandat 695.126 kb on - strandat 695.126 kb on - strandat 695.181 kb on + strandat 695.181 kb on + strandat 695.181 kb on + strandat 695.181 kb on + strandat 695.181 kb on + strandat 695.181 kb on + strandat 695.181 kb on + strandat 695.181 kb on + strandat 695.182 kb on - strandat 695.182 kb on - strandat 695.221 kb on + strand, within COO64_RS05895at 695.221 kb on + strand, within COO64_RS05895at 695.318 kb on + strand, within COO64_RS05895at 695.341 kb on + strand, within COO64_RS05895at 695.342 kb on - strand, within COO64_RS05895at 695.342 kb on - strand, within COO64_RS05895at 695.342 kb on - strand, within COO64_RS05895at 695.342 kb on - strand, within COO64_RS05895at 695.448 kb on + strand, within COO64_RS05895at 695.448 kb on + strand, within COO64_RS05895at 695.448 kb on + strand, within COO64_RS05895at 695.448 kb on + strand, within COO64_RS05895at 695.449 kb on - strand, within COO64_RS05895at 695.449 kb on - strand, within COO64_RS05895at 695.449 kb on - strand, within COO64_RS05895at 695.599 kb on - strand, within COO64_RS05895at 695.616 kb on + strand, within COO64_RS05895at 695.617 kb on - strand, within COO64_RS05895at 695.617 kb on - strand, within COO64_RS05895at 695.672 kb on + strandat 695.672 kb on + strandat 695.673 kb on - strandat 695.673 kb on - strandat 695.697 kb on + strandat 695.705 kb on + strandat 695.705 kb on + strandat 695.716 kb on + strandat 695.716 kb on + strandat 695.716 kb on + strandat 695.716 kb on + strandat 695.716 kb on + strandat 695.716 kb on + strandat 695.716 kb on + strandat 695.716 kb on + strandat 695.716 kb on + strandat 695.717 kb on - strandat 695.717 kb on - strandat 695.717 kb on - strandat 695.717 kb on - strandat 695.717 kb on - strandat 695.717 kb on - strandat 695.717 kb on - strandat 695.864 kb on + strand, within COO64_RS05900at 695.864 kb on + strand, within COO64_RS05900at 695.865 kb on - strand, within COO64_RS05900at 695.872 kb on + strand, within COO64_RS05900at 695.872 kb on + strand, within COO64_RS05900at 695.872 kb on + strand, within COO64_RS05900at 695.890 kb on + strand, within COO64_RS05900at 695.891 kb on - strand, within COO64_RS05900at 695.930 kb on + strand, within COO64_RS05900at 695.931 kb on - strand, within COO64_RS05900

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Per-strain Table

Position Strand Gene LocusTag Fraction mixed community control; LB
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692,405 - COO64_RS05885 0.50 -1.2
692,405 - COO64_RS05885 0.50 -1.6
692,724 - -0.5
692,724 - +1.0
692,724 - -0.4
692,724 - +0.4
692,754 - -0.3
692,758 + +0.5
692,758 + +0.2
692,758 + -1.3
692,759 - -0.9
692,759 - +0.5
692,759 - -0.7
692,891 + -0.2
692,891 + +0.4
692,892 - -0.2
692,957 + +1.0
692,958 - -0.3
693,177 + COO64_RS05890 0.17 -0.2
693,177 + COO64_RS05890 0.17 -1.7
693,178 - COO64_RS05890 0.17 +0.4
693,178 - COO64_RS05890 0.17 +0.4
693,178 - COO64_RS05890 0.17 +1.0
693,178 - COO64_RS05890 0.17 +0.1
693,178 - COO64_RS05890 0.17 -0.6
693,178 - COO64_RS05890 0.17 +0.2
693,262 + COO64_RS05890 0.21 -1.0
693,262 + COO64_RS05890 0.21 -0.0
693,262 + COO64_RS05890 0.21 +0.8
693,263 - COO64_RS05890 0.21 +1.4
693,263 - COO64_RS05890 0.21 +0.7
693,263 - COO64_RS05890 0.21 +0.4
693,263 - COO64_RS05890 0.21 -2.2
693,304 + COO64_RS05890 0.23 -0.1
693,304 + COO64_RS05890 0.23 +0.7
693,304 + COO64_RS05890 0.23 +1.3
693,467 + COO64_RS05890 0.30 +2.0
693,467 + COO64_RS05890 0.30 -1.2
693,467 + COO64_RS05890 0.30 -0.5
693,467 + COO64_RS05890 0.30 +0.6
693,468 - COO64_RS05890 0.30 +0.7
693,786 - COO64_RS05890 0.45 +0.6
693,996 + COO64_RS05890 0.54 +0.4
694,202 + COO64_RS05890 0.63 +0.4
694,203 - COO64_RS05890 0.64 -1.5
694,301 + COO64_RS05890 0.68 -0.4
694,301 + COO64_RS05890 0.68 +1.2
694,301 + COO64_RS05890 0.68 -0.4
694,301 + COO64_RS05890 0.68 -0.3
694,302 - COO64_RS05890 0.68 +0.5
694,302 - COO64_RS05890 0.68 -0.9
694,302 - COO64_RS05890 0.68 -0.7
694,302 - COO64_RS05890 0.68 +0.3
694,360 - COO64_RS05890 0.71 +0.3
694,417 + COO64_RS05890 0.73 -0.2
694,417 + COO64_RS05890 0.73 +0.2
694,682 - COO64_RS05890 0.85 -0.4
694,682 - COO64_RS05890 0.85 -1.4
694,682 - COO64_RS05890 0.85 +2.2
694,791 + +0.7
695,052 + -0.2
695,052 + +0.9
695,052 + +0.2
695,052 + -0.0
695,053 - -0.1
695,053 - +0.4
695,053 - -0.4
695,078 - -1.3
695,081 + +0.2
695,081 + -0.6
695,082 - +1.1
695,082 - -0.1
695,082 - +0.9
695,112 + +1.0
695,112 + -0.3
695,113 - -0.3
695,125 + +0.9
695,125 + -0.1
695,125 + -1.0
695,126 - -0.9
695,126 - -0.9
695,181 + +0.4
695,181 + -0.8
695,181 + +0.6
695,181 + +0.4
695,181 + -0.3
695,181 + +0.9
695,181 + -0.1
695,181 + +0.2
695,182 - +1.1
695,182 - +0.5
695,221 + COO64_RS05895 0.12 -0.3
695,221 + COO64_RS05895 0.12 -0.1
695,318 + COO64_RS05895 0.30 -0.7
695,341 + COO64_RS05895 0.34 +0.1
695,342 - COO64_RS05895 0.34 -0.2
695,342 - COO64_RS05895 0.34 -0.8
695,342 - COO64_RS05895 0.34 -0.5
695,342 - COO64_RS05895 0.34 +0.5
695,448 + COO64_RS05895 0.54 -0.7
695,448 + COO64_RS05895 0.54 -0.6
695,448 + COO64_RS05895 0.54 -0.3
695,448 + COO64_RS05895 0.54 +0.3
695,449 - COO64_RS05895 0.54 +1.0
695,449 - COO64_RS05895 0.54 +0.2
695,449 - COO64_RS05895 0.54 -0.1
695,599 - COO64_RS05895 0.81 +0.4
695,616 + COO64_RS05895 0.85 -1.2
695,617 - COO64_RS05895 0.85 -0.7
695,617 - COO64_RS05895 0.85 -1.2
695,672 + +0.1
695,672 + -1.2
695,673 - -0.3
695,673 - -0.8
695,697 + -0.2
695,705 + +0.9
695,705 + -0.3
695,716 + -1.0
695,716 + -0.2
695,716 + +0.7
695,716 + +0.4
695,716 + -2.1
695,716 + +1.0
695,716 + -0.6
695,716 + +1.1
695,716 + -2.0
695,717 - +0.5
695,717 - -0.6
695,717 - -0.1
695,717 - -0.3
695,717 - +0.1
695,717 - +0.3
695,717 - -0.2
695,864 + COO64_RS05900 0.25 +0.3
695,864 + COO64_RS05900 0.25 -1.2
695,865 - COO64_RS05900 0.25 -0.3
695,872 + COO64_RS05900 0.26 -0.8
695,872 + COO64_RS05900 0.26 +0.0
695,872 + COO64_RS05900 0.26 +0.4
695,890 + COO64_RS05900 0.29 +0.2
695,891 - COO64_RS05900 0.29 -0.3
695,930 + COO64_RS05900 0.34 -0.1
695,931 - COO64_RS05900 0.34 -0.6

Or see this region's nucleotide sequence