Experiment: Pectin from apple; autoclaved 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05282 and BACOVA_05283 are separated by 70 nucleotides BACOVA_05283 and BACOVA_05284 are separated by 30 nucleotides BACOVA_05284 and BACOVA_05285 are separated by 112 nucleotides BACOVA_05285 and BACOVA_05286 are separated by 33 nucleotides BACOVA_05286 and BACOVA_05287 are separated by 147 nucleotides
BACOVA_05282: BACOVA_05282 - KamA family protein, at 775,576 to 777,711
_05282
BACOVA_05283: BACOVA_05283 - hypothetical protein, at 777,782 to 777,922
_05283
BACOVA_05284: BACOVA_05284 - hypothetical protein, at 777,953 to 778,585
_05284
BACOVA_05285: BACOVA_05285 - amino acid carrier protein, at 778,698 to 780,086
_05285
BACOVA_05286: BACOVA_05286 - divergent AAA domain protein, at 780,120 to 780,767
_05286
BACOVA_05287: BACOVA_05287 - hypothetical protein, at 780,915 to 781,091
_05287
Position (kb) 778
779
780
781 Strain fitness (log2 ratio) -2
-1
0
1 at 777.712 kb on - strand at 777.739 kb on - strand at 777.740 kb on + strand at 777.740 kb on + strand at 777.741 kb on - strand at 777.743 kb on + strand at 777.745 kb on + strand at 777.745 kb on + strand at 777.745 kb on + strand at 777.746 kb on - strand at 777.844 kb on - strand, within BACOVA_05283 at 777.869 kb on - strand, within BACOVA_05283 at 777.869 kb on - strand, within BACOVA_05283 at 777.869 kb on - strand, within BACOVA_05283 at 777.913 kb on - strand at 777.954 kb on + strand at 778.645 kb on - strand at 778.650 kb on - strand at 778.654 kb on - strand at 778.810 kb on + strand at 778.811 kb on - strand at 778.841 kb on + strand, within BACOVA_05285 at 778.841 kb on + strand, within BACOVA_05285 at 778.847 kb on + strand, within BACOVA_05285 at 778.847 kb on + strand, within BACOVA_05285 at 778.885 kb on - strand, within BACOVA_05285 at 778.885 kb on - strand, within BACOVA_05285 at 778.922 kb on + strand, within BACOVA_05285 at 778.936 kb on - strand, within BACOVA_05285 at 778.943 kb on - strand, within BACOVA_05285 at 778.953 kb on + strand, within BACOVA_05285 at 778.974 kb on - strand, within BACOVA_05285 at 778.986 kb on - strand, within BACOVA_05285 at 778.997 kb on - strand, within BACOVA_05285 at 778.997 kb on - strand, within BACOVA_05285 at 778.999 kb on + strand, within BACOVA_05285 at 779.043 kb on + strand, within BACOVA_05285 at 779.057 kb on + strand, within BACOVA_05285 at 779.058 kb on - strand, within BACOVA_05285 at 779.074 kb on - strand, within BACOVA_05285 at 779.074 kb on - strand, within BACOVA_05285 at 779.142 kb on - strand, within BACOVA_05285 at 779.153 kb on + strand, within BACOVA_05285 at 779.154 kb on - strand, within BACOVA_05285 at 779.169 kb on - strand, within BACOVA_05285 at 779.169 kb on - strand, within BACOVA_05285 at 779.172 kb on + strand, within BACOVA_05285 at 779.172 kb on + strand, within BACOVA_05285 at 779.173 kb on - strand, within BACOVA_05285 at 779.190 kb on - strand, within BACOVA_05285 at 779.190 kb on - strand, within BACOVA_05285 at 779.324 kb on + strand, within BACOVA_05285 at 779.405 kb on + strand, within BACOVA_05285 at 779.437 kb on - strand, within BACOVA_05285 at 779.454 kb on - strand, within BACOVA_05285 at 779.454 kb on - strand, within BACOVA_05285 at 779.456 kb on + strand, within BACOVA_05285 at 779.465 kb on + strand, within BACOVA_05285 at 779.468 kb on + strand, within BACOVA_05285 at 779.544 kb on + strand, within BACOVA_05285 at 779.545 kb on - strand, within BACOVA_05285 at 779.546 kb on + strand, within BACOVA_05285 at 779.546 kb on + strand, within BACOVA_05285 at 779.547 kb on - strand, within BACOVA_05285 at 779.547 kb on - strand, within BACOVA_05285 at 779.549 kb on + strand, within BACOVA_05285 at 779.549 kb on + strand, within BACOVA_05285 at 779.550 kb on - strand, within BACOVA_05285 at 779.595 kb on - strand, within BACOVA_05285 at 779.634 kb on + strand, within BACOVA_05285 at 779.634 kb on + strand, within BACOVA_05285 at 779.635 kb on - strand, within BACOVA_05285 at 779.637 kb on + strand, within BACOVA_05285 at 779.688 kb on - strand, within BACOVA_05285 at 779.690 kb on - strand, within BACOVA_05285 at 779.692 kb on + strand, within BACOVA_05285 at 779.692 kb on + strand, within BACOVA_05285 at 779.727 kb on + strand, within BACOVA_05285 at 779.737 kb on - strand, within BACOVA_05285 at 779.808 kb on - strand, within BACOVA_05285 at 779.907 kb on + strand, within BACOVA_05285 at 779.908 kb on - strand, within BACOVA_05285 at 779.950 kb on - strand at 780.025 kb on - strand at 780.027 kb on + strand at 780.028 kb on - strand at 780.032 kb on + strand at 780.032 kb on + strand at 780.033 kb on - strand at 780.036 kb on - strand at 780.039 kb on + strand at 780.045 kb on - strand at 780.046 kb on + strand at 780.046 kb on + strand at 780.047 kb on - strand at 780.047 kb on - strand at 780.047 kb on - strand at 780.058 kb on - strand at 780.087 kb on - strand at 780.091 kb on - strand at 780.097 kb on + strand at 780.101 kb on + strand at 780.102 kb on - strand at 780.103 kb on + strand at 780.149 kb on + strand at 780.244 kb on + strand, within BACOVA_05286 at 780.261 kb on + strand, within BACOVA_05286 at 780.363 kb on + strand, within BACOVA_05286 at 780.363 kb on + strand, within BACOVA_05286 at 780.403 kb on + strand, within BACOVA_05286 at 780.495 kb on + strand, within BACOVA_05286 at 780.496 kb on - strand, within BACOVA_05286 at 780.496 kb on - strand, within BACOVA_05286 at 780.499 kb on + strand, within BACOVA_05286 at 780.562 kb on + strand, within BACOVA_05286 at 780.596 kb on + strand, within BACOVA_05286 at 780.596 kb on + strand, within BACOVA_05286 at 780.621 kb on + strand, within BACOVA_05286 at 780.622 kb on - strand, within BACOVA_05286 at 780.622 kb on - strand, within BACOVA_05286 at 780.738 kb on + strand at 780.739 kb on - strand at 780.739 kb on - strand at 780.739 kb on - strand at 780.740 kb on + strand at 780.740 kb on + strand at 780.740 kb on + strand at 780.741 kb on - strand at 780.743 kb on - strand at 780.743 kb on - strand at 780.743 kb on - strand at 780.749 kb on + strand at 780.771 kb on + strand at 780.783 kb on + strand at 780.890 kb on + strand at 781.020 kb on - strand, within BACOVA_05287 at 781.020 kb on - strand, within BACOVA_05287 at 781.082 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple; autoclaved 2.5 mg/mL (C) remove 777,712 - -0.7 777,739 - +0.2 777,740 + -0.5 777,740 + +0.3 777,741 - -0.5 777,743 + +0.8 777,745 + +0.1 777,745 + -0.4 777,745 + -0.8 777,746 - -0.3 777,844 - BACOVA_05283 0.44 -0.2 777,869 - BACOVA_05283 0.62 -0.8 777,869 - BACOVA_05283 0.62 -1.1 777,869 - BACOVA_05283 0.62 +1.2 777,913 - +0.6 777,954 + -0.1 778,645 - -0.1 778,650 - -1.1 778,654 - -0.6 778,810 + +0.1 778,811 - +0.2 778,841 + BACOVA_05285 0.10 +0.1 778,841 + BACOVA_05285 0.10 +1.1 778,847 + BACOVA_05285 0.11 -0.2 778,847 + BACOVA_05285 0.11 -0.6 778,885 - BACOVA_05285 0.13 -0.2 778,885 - BACOVA_05285 0.13 -0.7 778,922 + BACOVA_05285 0.16 -0.0 778,936 - BACOVA_05285 0.17 -1.2 778,943 - BACOVA_05285 0.18 -0.8 778,953 + BACOVA_05285 0.18 -0.1 778,974 - BACOVA_05285 0.20 +0.6 778,986 - BACOVA_05285 0.21 -0.8 778,997 - BACOVA_05285 0.22 +0.2 778,997 - BACOVA_05285 0.22 -0.4 778,999 + BACOVA_05285 0.22 -0.6 779,043 + BACOVA_05285 0.25 +0.5 779,057 + BACOVA_05285 0.26 -0.0 779,058 - BACOVA_05285 0.26 -0.7 779,074 - BACOVA_05285 0.27 -1.2 779,074 - BACOVA_05285 0.27 +0.3 779,142 - BACOVA_05285 0.32 -0.8 779,153 + BACOVA_05285 0.33 +1.1 779,154 - BACOVA_05285 0.33 -0.3 779,169 - BACOVA_05285 0.34 -0.2 779,169 - BACOVA_05285 0.34 -0.3 779,172 + BACOVA_05285 0.34 -0.8 779,172 + BACOVA_05285 0.34 -1.7 779,173 - BACOVA_05285 0.34 +1.1 779,190 - BACOVA_05285 0.35 -0.2 779,190 - BACOVA_05285 0.35 -0.3 779,324 + BACOVA_05285 0.45 +1.0 779,405 + BACOVA_05285 0.51 -1.4 779,437 - BACOVA_05285 0.53 -0.8 779,454 - BACOVA_05285 0.54 +1.2 779,454 - BACOVA_05285 0.54 +0.3 779,456 + BACOVA_05285 0.55 -0.5 779,465 + BACOVA_05285 0.55 +0.5 779,468 + BACOVA_05285 0.55 -0.1 779,544 + BACOVA_05285 0.61 -0.3 779,545 - BACOVA_05285 0.61 -1.1 779,546 + BACOVA_05285 0.61 -0.3 779,546 + BACOVA_05285 0.61 +0.8 779,547 - BACOVA_05285 0.61 +0.9 779,547 - BACOVA_05285 0.61 +0.2 779,549 + BACOVA_05285 0.61 +0.4 779,549 + BACOVA_05285 0.61 -0.6 779,550 - BACOVA_05285 0.61 +0.6 779,595 - BACOVA_05285 0.65 -0.8 779,634 + BACOVA_05285 0.67 +0.2 779,634 + BACOVA_05285 0.67 -0.0 779,635 - BACOVA_05285 0.67 -0.6 779,637 + BACOVA_05285 0.68 +0.8 779,688 - BACOVA_05285 0.71 +0.7 779,690 - BACOVA_05285 0.71 +1.2 779,692 + BACOVA_05285 0.72 -0.0 779,692 + BACOVA_05285 0.72 +0.3 779,727 + BACOVA_05285 0.74 +0.6 779,737 - BACOVA_05285 0.75 -1.6 779,808 - BACOVA_05285 0.80 -0.9 779,907 + BACOVA_05285 0.87 -0.5 779,908 - BACOVA_05285 0.87 +0.6 779,950 - -0.2 780,025 - +0.6 780,027 + +1.5 780,028 - -0.2 780,032 + -1.3 780,032 + +0.3 780,033 - +0.6 780,036 - +0.4 780,039 + +1.4 780,045 - +1.5 780,046 + -0.0 780,046 + -1.6 780,047 - -0.8 780,047 - -0.7 780,047 - -0.5 780,058 - +1.0 780,087 - +0.5 780,091 - -0.0 780,097 + +0.1 780,101 + +0.9 780,102 - -0.2 780,103 + +1.0 780,149 + +0.2 780,244 + BACOVA_05286 0.19 +0.2 780,261 + BACOVA_05286 0.22 -0.5 780,363 + BACOVA_05286 0.38 +0.8 780,363 + BACOVA_05286 0.38 +0.4 780,403 + BACOVA_05286 0.44 +0.6 780,495 + BACOVA_05286 0.58 -0.1 780,496 - BACOVA_05286 0.58 +0.5 780,496 - BACOVA_05286 0.58 -0.5 780,499 + BACOVA_05286 0.58 -0.2 780,562 + BACOVA_05286 0.68 -0.7 780,596 + BACOVA_05286 0.73 -1.7 780,596 + BACOVA_05286 0.73 -1.8 780,621 + BACOVA_05286 0.77 +0.5 780,622 - BACOVA_05286 0.77 -1.0 780,622 - BACOVA_05286 0.77 -0.6 780,738 + -0.1 780,739 - -1.8 780,739 - -0.7 780,739 - +0.2 780,740 + -0.2 780,740 + -1.5 780,740 + -0.3 780,741 - +0.3 780,743 - -0.4 780,743 - -0.9 780,743 - +1.2 780,749 + +0.4 780,771 + +1.0 780,783 + -1.1 780,890 + -0.7 781,020 - BACOVA_05287 0.59 -0.4 781,020 - BACOVA_05287 0.59 -2.2 781,082 + -0.3
Or see this region's nucleotide sequence