Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05177

Experiment: Pectin from apple; autoclaved 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05176 and BACOVA_05177 are separated by 68 nucleotidesBACOVA_05177 and BACOVA_05178 overlap by 17 nucleotides BACOVA_05176: BACOVA_05176 - sigma factor regulatory protein, FecR/PupR family, at 662,838 to 663,860 _05176 BACOVA_05177: BACOVA_05177 - hypothetical protein, at 663,929 to 664,045 _05177 BACOVA_05178: BACOVA_05178 - TonB-linked outer membrane protein, SusC/RagA family, at 664,029 to 667,418 _05178 Position (kb) 663 664 665Strain fitness (log2 ratio) -2 -1 0 1 2at 662.974 kb on + strand, within BACOVA_05176at 662.974 kb on + strand, within BACOVA_05176at 662.975 kb on - strand, within BACOVA_05176at 662.986 kb on - strand, within BACOVA_05176at 663.000 kb on - strand, within BACOVA_05176at 663.000 kb on - strand, within BACOVA_05176at 663.068 kb on + strand, within BACOVA_05176at 663.155 kb on - strand, within BACOVA_05176at 663.286 kb on - strand, within BACOVA_05176at 663.339 kb on + strand, within BACOVA_05176at 663.376 kb on + strand, within BACOVA_05176at 663.376 kb on + strand, within BACOVA_05176at 663.377 kb on - strand, within BACOVA_05176at 663.377 kb on - strand, within BACOVA_05176at 663.383 kb on + strand, within BACOVA_05176at 663.383 kb on + strand, within BACOVA_05176at 663.439 kb on + strand, within BACOVA_05176at 663.484 kb on + strand, within BACOVA_05176at 663.552 kb on + strand, within BACOVA_05176at 663.552 kb on + strand, within BACOVA_05176at 663.552 kb on + strand, within BACOVA_05176at 663.553 kb on - strand, within BACOVA_05176at 663.558 kb on - strand, within BACOVA_05176at 663.559 kb on + strand, within BACOVA_05176at 663.559 kb on + strand, within BACOVA_05176at 663.560 kb on - strand, within BACOVA_05176at 663.560 kb on - strand, within BACOVA_05176at 663.570 kb on - strand, within BACOVA_05176at 663.583 kb on - strand, within BACOVA_05176at 663.583 kb on - strand, within BACOVA_05176at 663.683 kb on + strand, within BACOVA_05176at 663.683 kb on + strand, within BACOVA_05176at 663.683 kb on + strand, within BACOVA_05176at 663.684 kb on - strand, within BACOVA_05176at 663.698 kb on + strand, within BACOVA_05176at 663.764 kb on + strandat 663.854 kb on - strandat 663.917 kb on + strandat 663.928 kb on - strandat 663.928 kb on - strandat 664.007 kb on - strand, within BACOVA_05177at 664.102 kb on + strandat 664.102 kb on + strandat 664.103 kb on - strandat 664.107 kb on - strandat 664.129 kb on + strandat 664.130 kb on - strandat 664.130 kb on - strandat 664.130 kb on - strandat 664.132 kb on + strandat 664.132 kb on + strandat 664.133 kb on - strandat 664.152 kb on + strandat 664.152 kb on + strandat 664.152 kb on + strandat 664.152 kb on + strandat 664.153 kb on - strandat 664.163 kb on + strandat 664.167 kb on + strandat 664.191 kb on - strandat 664.199 kb on - strandat 664.271 kb on + strandat 664.271 kb on + strandat 664.271 kb on + strandat 664.272 kb on - strandat 664.272 kb on - strandat 664.358 kb on + strandat 664.364 kb on - strandat 664.375 kb on + strand, within BACOVA_05178at 664.375 kb on + strand, within BACOVA_05178at 664.392 kb on - strand, within BACOVA_05178at 664.392 kb on - strand, within BACOVA_05178at 664.394 kb on - strand, within BACOVA_05178at 664.394 kb on - strand, within BACOVA_05178at 664.449 kb on - strand, within BACOVA_05178at 664.451 kb on + strand, within BACOVA_05178at 664.532 kb on + strand, within BACOVA_05178at 664.593 kb on - strand, within BACOVA_05178at 664.736 kb on + strand, within BACOVA_05178at 664.766 kb on + strand, within BACOVA_05178at 664.780 kb on + strand, within BACOVA_05178at 664.780 kb on + strand, within BACOVA_05178at 664.781 kb on - strand, within BACOVA_05178at 664.863 kb on - strand, within BACOVA_05178at 664.935 kb on - strand, within BACOVA_05178at 664.980 kb on - strand, within BACOVA_05178at 664.985 kb on + strand, within BACOVA_05178

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple; autoclaved 2.5 mg/mL (C)
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662,974 + BACOVA_05176 0.13 -1.6
662,974 + BACOVA_05176 0.13 -1.3
662,975 - BACOVA_05176 0.13 +0.7
662,986 - BACOVA_05176 0.14 +0.9
663,000 - BACOVA_05176 0.16 -0.6
663,000 - BACOVA_05176 0.16 +2.2
663,068 + BACOVA_05176 0.22 +1.1
663,155 - BACOVA_05176 0.31 -0.1
663,286 - BACOVA_05176 0.44 -0.1
663,339 + BACOVA_05176 0.49 +0.2
663,376 + BACOVA_05176 0.53 -0.1
663,376 + BACOVA_05176 0.53 -1.5
663,377 - BACOVA_05176 0.53 -0.8
663,377 - BACOVA_05176 0.53 -0.0
663,383 + BACOVA_05176 0.53 +0.6
663,383 + BACOVA_05176 0.53 +0.2
663,439 + BACOVA_05176 0.59 +1.5
663,484 + BACOVA_05176 0.63 -0.6
663,552 + BACOVA_05176 0.70 -1.6
663,552 + BACOVA_05176 0.70 +0.2
663,552 + BACOVA_05176 0.70 +0.0
663,553 - BACOVA_05176 0.70 +1.1
663,558 - BACOVA_05176 0.70 +1.0
663,559 + BACOVA_05176 0.70 -0.3
663,559 + BACOVA_05176 0.70 -0.0
663,560 - BACOVA_05176 0.71 -1.5
663,560 - BACOVA_05176 0.71 +1.3
663,570 - BACOVA_05176 0.72 +1.0
663,583 - BACOVA_05176 0.73 +1.1
663,583 - BACOVA_05176 0.73 -0.7
663,683 + BACOVA_05176 0.83 -1.0
663,683 + BACOVA_05176 0.83 -0.0
663,683 + BACOVA_05176 0.83 -1.2
663,684 - BACOVA_05176 0.83 -0.2
663,698 + BACOVA_05176 0.84 -0.3
663,764 + +0.6
663,854 - +0.3
663,917 + +1.1
663,928 - +1.1
663,928 - -0.6
664,007 - BACOVA_05177 0.67 -0.6
664,102 + +0.1
664,102 + +1.3
664,103 - +0.4
664,107 - +0.5
664,129 + +1.2
664,130 - +0.8
664,130 - +0.6
664,130 - -0.0
664,132 + +0.2
664,132 + -0.3
664,133 - -0.8
664,152 + +0.6
664,152 + -0.5
664,152 + -0.4
664,152 + -0.2
664,153 - -0.5
664,163 + +0.4
664,167 + +0.6
664,191 - -0.1
664,199 - +0.3
664,271 + +1.5
664,271 + +0.4
664,271 + -0.7
664,272 - +0.4
664,272 - +0.1
664,358 + -0.4
664,364 - +1.7
664,375 + BACOVA_05178 0.10 +0.3
664,375 + BACOVA_05178 0.10 -0.9
664,392 - BACOVA_05178 0.11 +0.4
664,392 - BACOVA_05178 0.11 +0.6
664,394 - BACOVA_05178 0.11 +0.7
664,394 - BACOVA_05178 0.11 -0.8
664,449 - BACOVA_05178 0.12 -0.9
664,451 + BACOVA_05178 0.12 +0.6
664,532 + BACOVA_05178 0.15 +0.2
664,593 - BACOVA_05178 0.17 +0.6
664,736 + BACOVA_05178 0.21 -0.9
664,766 + BACOVA_05178 0.22 +0.7
664,780 + BACOVA_05178 0.22 -0.5
664,780 + BACOVA_05178 0.22 -0.4
664,781 - BACOVA_05178 0.22 -0.1
664,863 - BACOVA_05178 0.25 +0.7
664,935 - BACOVA_05178 0.27 -2.4
664,980 - BACOVA_05178 0.28 +0.8
664,985 + BACOVA_05178 0.28 +0.2

Or see this region's nucleotide sequence