Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02867

Experiment: Pectin from apple; autoclaved 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02865 and BACOVA_02866 are separated by 19 nucleotidesBACOVA_02866 and BACOVA_02868 are separated by 369 nucleotidesBACOVA_02868 and BACOVA_02867 overlap by 14 nucleotidesBACOVA_02867 and BACOVA_02869 are separated by 24 nucleotidesBACOVA_02869 and BACOVA_02870 are separated by 11 nucleotidesBACOVA_02870 and BACOVA_02871 overlap by 4 nucleotides BACOVA_02865: BACOVA_02865 - hypothetical protein, at 356,866 to 358,914 _02865 BACOVA_02866: BACOVA_02866 - hypothetical protein, at 358,934 to 359,089 _02866 BACOVA_02868: BACOVA_02868 - hypothetical protein, at 359,459 to 359,605 _02868 BACOVA_02867: BACOVA_02867 - hypothetical protein, at 359,592 to 359,699 _02867 BACOVA_02869: BACOVA_02869 - transcriptional regulator, y4mF family, at 359,724 to 359,918 _02869 BACOVA_02870: BACOVA_02870 - HipA domain protein, at 359,930 to 360,253 _02870 BACOVA_02871: BACOVA_02871 - HipA-like C-terminal domain protein, at 360,250 to 361,266 _02871 Position (kb) 359 360Strain fitness (log2 ratio) -2 -1 0 1 2at 358.592 kb on + strand, within BACOVA_02865at 358.638 kb on + strand, within BACOVA_02865at 358.639 kb on - strand, within BACOVA_02865at 358.642 kb on + strand, within BACOVA_02865at 358.642 kb on + strand, within BACOVA_02865at 358.642 kb on + strand, within BACOVA_02865at 358.649 kb on - strand, within BACOVA_02865at 358.664 kb on - strand, within BACOVA_02865at 358.689 kb on + strand, within BACOVA_02865at 358.725 kb on + strandat 358.726 kb on - strandat 358.786 kb on + strandat 358.812 kb on + strandat 358.825 kb on + strandat 358.890 kb on + strandat 358.890 kb on + strandat 358.891 kb on - strandat 358.891 kb on - strandat 358.966 kb on + strand, within BACOVA_02866at 359.037 kb on + strand, within BACOVA_02866at 359.038 kb on - strand, within BACOVA_02866at 359.105 kb on + strandat 359.115 kb on - strandat 359.123 kb on - strandat 359.134 kb on - strandat 359.146 kb on + strandat 359.156 kb on - strandat 359.166 kb on - strandat 359.227 kb on - strandat 359.228 kb on + strandat 359.261 kb on - strandat 359.261 kb on - strandat 359.284 kb on + strandat 359.285 kb on - strandat 359.292 kb on + strandat 359.325 kb on - strandat 359.325 kb on - strandat 359.405 kb on - strandat 359.411 kb on + strandat 359.506 kb on - strand, within BACOVA_02868at 359.510 kb on + strand, within BACOVA_02868at 359.560 kb on + strand, within BACOVA_02868at 359.560 kb on + strand, within BACOVA_02868at 359.561 kb on - strand, within BACOVA_02868at 359.563 kb on - strand, within BACOVA_02868at 359.563 kb on - strand, within BACOVA_02868at 359.570 kb on + strand, within BACOVA_02868at 359.571 kb on - strand, within BACOVA_02868at 359.589 kb on + strand, within BACOVA_02868at 359.589 kb on + strand, within BACOVA_02868at 359.590 kb on - strand, within BACOVA_02868at 359.591 kb on + strandat 359.611 kb on + strand, within BACOVA_02867at 359.711 kb on + strandat 359.713 kb on + strandat 359.714 kb on - strandat 359.853 kb on - strand, within BACOVA_02869at 359.876 kb on + strand, within BACOVA_02869at 359.903 kb on + strandat 359.904 kb on - strandat 359.904 kb on - strandat 359.929 kb on + strandat 359.967 kb on - strand, within BACOVA_02870at 360.015 kb on - strand, within BACOVA_02870at 360.032 kb on - strand, within BACOVA_02870at 360.087 kb on - strand, within BACOVA_02870at 360.089 kb on - strand, within BACOVA_02870at 360.149 kb on - strand, within BACOVA_02870at 360.170 kb on - strand, within BACOVA_02870at 360.206 kb on - strand, within BACOVA_02870at 360.221 kb on - strandat 360.221 kb on - strandat 360.235 kb on - strandat 360.267 kb on + strandat 360.273 kb on + strandat 360.357 kb on + strand, within BACOVA_02871at 360.358 kb on - strand, within BACOVA_02871at 360.378 kb on + strand, within BACOVA_02871at 360.379 kb on - strand, within BACOVA_02871at 360.409 kb on - strand, within BACOVA_02871at 360.424 kb on - strand, within BACOVA_02871at 360.424 kb on - strand, within BACOVA_02871at 360.434 kb on + strand, within BACOVA_02871at 360.461 kb on - strand, within BACOVA_02871at 360.461 kb on - strand, within BACOVA_02871at 360.467 kb on + strand, within BACOVA_02871at 360.467 kb on + strand, within BACOVA_02871at 360.527 kb on + strand, within BACOVA_02871at 360.596 kb on + strand, within BACOVA_02871at 360.639 kb on - strand, within BACOVA_02871at 360.667 kb on + strand, within BACOVA_02871

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple; autoclaved 2.5 mg/mL (C)
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358,592 + BACOVA_02865 0.84 +2.0
358,638 + BACOVA_02865 0.86 +0.0
358,639 - BACOVA_02865 0.87 +1.2
358,642 + BACOVA_02865 0.87 +0.7
358,642 + BACOVA_02865 0.87 -1.1
358,642 + BACOVA_02865 0.87 +0.1
358,649 - BACOVA_02865 0.87 -0.7
358,664 - BACOVA_02865 0.88 -0.7
358,689 + BACOVA_02865 0.89 -0.8
358,725 + +0.4
358,726 - +0.4
358,786 + +0.1
358,812 + -0.0
358,825 + +0.1
358,890 + +0.0
358,890 + +1.8
358,891 - -0.6
358,891 - +1.0
358,966 + BACOVA_02866 0.21 +0.1
359,037 + BACOVA_02866 0.66 +0.5
359,038 - BACOVA_02866 0.67 +0.3
359,105 + +0.6
359,115 - -1.2
359,123 - +0.4
359,134 - -0.4
359,146 + -0.1
359,156 - -0.5
359,166 - +0.2
359,227 - +0.7
359,228 + -1.8
359,261 - +0.2
359,261 - -0.1
359,284 + -0.3
359,285 - +0.4
359,292 + -0.7
359,325 - +1.4
359,325 - -0.0
359,405 - +1.8
359,411 + -0.8
359,506 - BACOVA_02868 0.32 -0.8
359,510 + BACOVA_02868 0.35 +0.5
359,560 + BACOVA_02868 0.69 +0.4
359,560 + BACOVA_02868 0.69 -0.4
359,561 - BACOVA_02868 0.69 -0.2
359,563 - BACOVA_02868 0.71 +0.2
359,563 - BACOVA_02868 0.71 +0.4
359,570 + BACOVA_02868 0.76 +0.5
359,571 - BACOVA_02868 0.76 -0.3
359,589 + BACOVA_02868 0.88 -1.1
359,589 + BACOVA_02868 0.88 -2.0
359,590 - BACOVA_02868 0.89 +0.2
359,591 + -0.2
359,611 + BACOVA_02867 0.18 +1.0
359,711 + +0.5
359,713 + +0.0
359,714 - +0.9
359,853 - BACOVA_02869 0.66 +0.6
359,876 + BACOVA_02869 0.78 +0.6
359,903 + +1.8
359,904 - +0.3
359,904 - +0.3
359,929 + -1.4
359,967 - BACOVA_02870 0.11 -0.1
360,015 - BACOVA_02870 0.26 +0.0
360,032 - BACOVA_02870 0.31 +1.5
360,087 - BACOVA_02870 0.48 +0.1
360,089 - BACOVA_02870 0.49 -0.1
360,149 - BACOVA_02870 0.68 -0.1
360,170 - BACOVA_02870 0.74 -1.3
360,206 - BACOVA_02870 0.85 +0.1
360,221 - +0.2
360,221 - -0.3
360,235 - -0.4
360,267 + -0.6
360,273 + +0.2
360,357 + BACOVA_02871 0.11 -0.1
360,358 - BACOVA_02871 0.11 +0.7
360,378 + BACOVA_02871 0.13 +0.1
360,379 - BACOVA_02871 0.13 +1.1
360,409 - BACOVA_02871 0.16 +0.2
360,424 - BACOVA_02871 0.17 -0.6
360,424 - BACOVA_02871 0.17 -0.6
360,434 + BACOVA_02871 0.18 -0.1
360,461 - BACOVA_02871 0.21 +0.8
360,461 - BACOVA_02871 0.21 +0.5
360,467 + BACOVA_02871 0.21 -1.1
360,467 + BACOVA_02871 0.21 -0.4
360,527 + BACOVA_02871 0.27 -0.4
360,596 + BACOVA_02871 0.34 -1.0
360,639 - BACOVA_02871 0.38 +1.5
360,667 + BACOVA_02871 0.41 -1.1

Or see this region's nucleotide sequence