Experiment: Pectin from apple; autoclaved 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02573 and BACOVA_02574 are separated by 13 nucleotides BACOVA_02574 and BACOVA_02575 are separated by 226 nucleotides BACOVA_02575 and BACOVA_02576 are separated by 35 nucleotides BACOVA_02576 and BACOVA_02577 are separated by 143 nucleotides BACOVA_02577 and BACOVA_02578 are separated by 162 nucleotides BACOVA_02578 and BACOVA_02579 are separated by 120 nucleotides BACOVA_02579 and BACOVA_02580 are separated by 63 nucleotides
BACOVA_02573: BACOVA_02573 - hypothetical protein, at 341,982 to 342,491
_02573
BACOVA_02574: BACOVA_02574 - hypothetical protein, at 342,505 to 342,801
_02574
BACOVA_02575: BACOVA_02575 - tRNA-Pro, at 343,028 to 343,102
_02575
BACOVA_02576: BACOVA_02576 - tRNA-Pro, at 343,138 to 343,212
_02576
BACOVA_02577: BACOVA_02577 - hypothetical protein, at 343,356 to 343,523
_02577
BACOVA_02578: BACOVA_02578 - hypothetical protein, at 343,686 to 343,814
_02578
BACOVA_02579: BACOVA_02579 - hypothetical protein, at 343,935 to 344,141
_02579
BACOVA_02580: BACOVA_02580 - ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein, at 344,205 to 345,476
_02580
Position (kb) 343
344 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 342.367 kb on - strand, within BACOVA_02573 at 342.389 kb on + strand, within BACOVA_02573 at 342.390 kb on - strand, within BACOVA_02573 at 342.414 kb on + strand, within BACOVA_02573 at 342.417 kb on - strand, within BACOVA_02573 at 342.419 kb on - strand, within BACOVA_02573 at 342.419 kb on - strand, within BACOVA_02573 at 342.450 kb on + strand at 342.456 kb on + strand at 342.489 kb on - strand at 342.491 kb on + strand at 342.492 kb on - strand at 342.537 kb on - strand, within BACOVA_02574 at 342.539 kb on + strand, within BACOVA_02574 at 342.548 kb on - strand, within BACOVA_02574 at 342.572 kb on - strand, within BACOVA_02574 at 342.625 kb on - strand, within BACOVA_02574 at 342.678 kb on - strand, within BACOVA_02574 at 342.730 kb on - strand, within BACOVA_02574 at 342.730 kb on - strand, within BACOVA_02574 at 342.772 kb on + strand at 342.784 kb on - strand at 342.849 kb on + strand at 342.877 kb on + strand at 342.877 kb on + strand at 342.877 kb on + strand at 342.884 kb on - strand at 342.884 kb on - strand at 342.924 kb on - strand at 342.948 kb on - strand at 342.954 kb on - strand at 342.959 kb on - strand at 342.962 kb on + strand at 342.963 kb on - strand at 342.980 kb on - strand at 342.982 kb on + strand at 342.988 kb on + strand at 342.989 kb on - strand at 342.989 kb on - strand at 343.118 kb on - strand at 343.120 kb on + strand at 343.120 kb on + strand at 343.439 kb on + strand, within BACOVA_02577 at 343.656 kb on + strand at 343.657 kb on - strand at 343.657 kb on - strand at 343.784 kb on + strand, within BACOVA_02578 at 343.784 kb on + strand, within BACOVA_02578 at 343.789 kb on + strand, within BACOVA_02578 at 343.804 kb on - strand at 343.815 kb on - strand at 343.841 kb on - strand at 343.847 kb on - strand at 343.872 kb on + strand at 343.894 kb on + strand at 343.895 kb on - strand at 344.072 kb on + strand, within BACOVA_02579 at 344.073 kb on - strand, within BACOVA_02579 at 344.115 kb on - strand, within BACOVA_02579 at 344.129 kb on + strand at 344.130 kb on - strand at 344.132 kb on + strand at 344.139 kb on + strand at 344.140 kb on - strand at 344.153 kb on - strand at 344.164 kb on + strand at 344.264 kb on + strand at 344.264 kb on + strand at 344.265 kb on - strand at 344.374 kb on - strand, within BACOVA_02580 at 344.397 kb on + strand, within BACOVA_02580 at 344.397 kb on + strand, within BACOVA_02580 at 344.397 kb on + strand, within BACOVA_02580 at 344.398 kb on - strand, within BACOVA_02580 at 344.448 kb on - strand, within BACOVA_02580 at 344.508 kb on + strand, within BACOVA_02580 at 344.523 kb on + strand, within BACOVA_02580
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple; autoclaved 2.5 mg/mL (C) remove 342,367 - BACOVA_02573 0.75 -0.0 342,389 + BACOVA_02573 0.80 +0.6 342,390 - BACOVA_02573 0.80 +0.6 342,414 + BACOVA_02573 0.85 -0.4 342,417 - BACOVA_02573 0.85 -0.5 342,419 - BACOVA_02573 0.86 +0.6 342,419 - BACOVA_02573 0.86 +1.5 342,450 + +0.1 342,456 + +1.2 342,489 - -3.3 342,491 + +0.5 342,492 - -1.4 342,537 - BACOVA_02574 0.11 +1.0 342,539 + BACOVA_02574 0.11 -0.4 342,548 - BACOVA_02574 0.14 +0.7 342,572 - BACOVA_02574 0.23 +1.0 342,625 - BACOVA_02574 0.40 +1.7 342,678 - BACOVA_02574 0.58 -1.4 342,730 - BACOVA_02574 0.76 +0.2 342,730 - BACOVA_02574 0.76 +0.7 342,772 + +0.3 342,784 - +0.7 342,849 + +0.6 342,877 + +0.6 342,877 + +0.3 342,877 + +1.3 342,884 - +0.4 342,884 - -0.6 342,924 - -0.3 342,948 - +0.9 342,954 - -1.9 342,959 - -0.9 342,962 + -1.5 342,963 - -0.7 342,980 - +0.3 342,982 + +0.8 342,988 + +0.6 342,989 - -0.6 342,989 - -0.5 343,118 - +0.3 343,120 + -1.0 343,120 + +0.8 343,439 + BACOVA_02577 0.49 -0.0 343,656 + +0.6 343,657 - -0.2 343,657 - +0.1 343,784 + BACOVA_02578 0.76 -0.8 343,784 + BACOVA_02578 0.76 -0.6 343,789 + BACOVA_02578 0.80 +0.8 343,804 - -0.4 343,815 - +0.3 343,841 - +0.7 343,847 - +0.7 343,872 + +0.1 343,894 + -0.6 343,895 - +0.4 344,072 + BACOVA_02579 0.66 +0.3 344,073 - BACOVA_02579 0.67 -0.5 344,115 - BACOVA_02579 0.87 +0.2 344,129 + +0.9 344,130 - +0.4 344,132 + +0.5 344,139 + +0.1 344,140 - +0.8 344,153 - +0.6 344,164 + -0.3 344,264 + -0.2 344,264 + -0.4 344,265 - +0.8 344,374 - BACOVA_02580 0.13 -0.1 344,397 + BACOVA_02580 0.15 -0.7 344,397 + BACOVA_02580 0.15 +0.8 344,397 + BACOVA_02580 0.15 -0.1 344,398 - BACOVA_02580 0.15 -1.4 344,448 - BACOVA_02580 0.19 -0.6 344,508 + BACOVA_02580 0.24 +1.0 344,523 + BACOVA_02580 0.25 -0.6
Or see this region's nucleotide sequence