Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02564

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_02563 and MPMX26_02564 are separated by 609 nucleotidesMPMX26_02564 and MPMX26_02565 are separated by 420 nucleotides MPMX26_02563: MPMX26_02563 - HTH-type transcriptional regulator BenM, at 2,655,297 to 2,656,214 _02563 MPMX26_02564: MPMX26_02564 - FhuE receptor, at 2,656,824 to 2,659,067 _02564 MPMX26_02565: MPMX26_02565 - hypothetical protein, at 2,659,488 to 2,660,114 _02565 Position (kb) 2656 2657 2658 2659 2660Strain fitness (log2 ratio) -1 0 1at 2655.950 kb on - strand, within MPMX26_02563at 2656.121 kb on - strand, within MPMX26_02563at 2656.121 kb on - strand, within MPMX26_02563at 2656.121 kb on - strand, within MPMX26_02563at 2656.121 kb on - strand, within MPMX26_02563at 2656.121 kb on - strand, within MPMX26_02563at 2656.121 kb on - strand, within MPMX26_02563at 2656.121 kb on - strand, within MPMX26_02563at 2656.161 kb on - strandat 2656.190 kb on - strandat 2656.348 kb on + strandat 2656.348 kb on + strandat 2656.348 kb on + strandat 2656.348 kb on + strandat 2656.371 kb on + strandat 2659.680 kb on - strand, within MPMX26_02565at 2659.766 kb on - strand, within MPMX26_02565at 2659.773 kb on - strand, within MPMX26_02565at 2659.773 kb on - strand, within MPMX26_02565at 2659.773 kb on - strand, within MPMX26_02565at 2659.871 kb on - strand, within MPMX26_02565at 2659.947 kb on - strand, within MPMX26_02565

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,655,950 - MPMX26_02563 0.71 +1.7
2,656,121 - MPMX26_02563 0.90 +0.3
2,656,121 - MPMX26_02563 0.90 +0.1
2,656,121 - MPMX26_02563 0.90 -0.0
2,656,121 - MPMX26_02563 0.90 -1.0
2,656,121 - MPMX26_02563 0.90 +1.1
2,656,121 - MPMX26_02563 0.90 +0.5
2,656,121 - MPMX26_02563 0.90 -0.5
2,656,161 - -0.4
2,656,190 - -0.1
2,656,348 + +0.3
2,656,348 + +0.7
2,656,348 + -0.2
2,656,348 + -0.1
2,656,371 + -0.5
2,659,680 - MPMX26_02565 0.31 +0.6
2,659,766 - MPMX26_02565 0.44 +0.0
2,659,773 - MPMX26_02565 0.45 +0.8
2,659,773 - MPMX26_02565 0.45 +0.1
2,659,773 - MPMX26_02565 0.45 +0.9
2,659,871 - MPMX26_02565 0.61 -1.2
2,659,947 - MPMX26_02565 0.73 -0.1

Or see this region's nucleotide sequence