Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02338

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_02336 and MPMX26_02337 are separated by 78 nucleotidesMPMX26_02337 and MPMX26_02338 are separated by 27 nucleotidesMPMX26_02338 and MPMX26_02339 overlap by 20 nucleotidesMPMX26_02339 and MPMX26_02340 are separated by 12 nucleotides MPMX26_02336: MPMX26_02336 - Biosynthetic peptidoglycan transglycosylase, at 2,411,061 to 2,411,735 _02336 MPMX26_02337: MPMX26_02337 - Rhomboid protease AarA, at 2,411,814 to 2,412,620 _02337 MPMX26_02338: MPMX26_02338 - hypothetical protein, at 2,412,648 to 2,415,128 _02338 MPMX26_02339: MPMX26_02339 - ABC transporter ATP-binding protein YtrE, at 2,415,109 to 2,415,855 _02339 MPMX26_02340: MPMX26_02340 - Esterase TesA, at 2,415,868 to 2,416,497 _02340 Position (kb) 2412 2413 2414 2415 2416Strain fitness (log2 ratio) -2 -1 0 1 2at 2411.691 kb on - strandat 2412.824 kb on - strandat 2413.029 kb on - strand, within MPMX26_02338at 2413.122 kb on - strand, within MPMX26_02338at 2413.353 kb on - strand, within MPMX26_02338at 2413.590 kb on - strand, within MPMX26_02338at 2413.982 kb on - strand, within MPMX26_02338at 2415.190 kb on - strand, within MPMX26_02339at 2415.190 kb on - strand, within MPMX26_02339at 2415.427 kb on - strand, within MPMX26_02339at 2415.438 kb on - strand, within MPMX26_02339at 2415.646 kb on - strand, within MPMX26_02339at 2415.646 kb on - strand, within MPMX26_02339at 2415.657 kb on - strand, within MPMX26_02339at 2415.712 kb on - strand, within MPMX26_02339at 2415.921 kb on + strandat 2416.042 kb on + strand, within MPMX26_02340at 2416.098 kb on + strand, within MPMX26_02340at 2416.098 kb on + strand, within MPMX26_02340

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,411,691 - +0.2
2,412,824 - -1.5
2,413,029 - MPMX26_02338 0.15 -1.0
2,413,122 - MPMX26_02338 0.19 -0.9
2,413,353 - MPMX26_02338 0.28 +2.2
2,413,590 - MPMX26_02338 0.38 +0.3
2,413,982 - MPMX26_02338 0.54 -0.9
2,415,190 - MPMX26_02339 0.11 +0.3
2,415,190 - MPMX26_02339 0.11 +0.2
2,415,427 - MPMX26_02339 0.43 +0.8
2,415,438 - MPMX26_02339 0.44 +1.0
2,415,646 - MPMX26_02339 0.72 -0.3
2,415,646 - MPMX26_02339 0.72 +0.9
2,415,657 - MPMX26_02339 0.73 -1.0
2,415,712 - MPMX26_02339 0.81 -0.4
2,415,921 + +1.3
2,416,042 + MPMX26_02340 0.28 +1.0
2,416,098 + MPMX26_02340 0.37 -2.0
2,416,098 + MPMX26_02340 0.37 -0.3

Or see this region's nucleotide sequence