Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02181

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_02180 and MPMX26_02181 are separated by 227 nucleotidesMPMX26_02181 and MPMX26_02182 are separated by 118 nucleotides MPMX26_02180: MPMX26_02180 - malonic semialdehyde reductase RutE, at 2,233,468 to 2,234,250 _02180 MPMX26_02181: MPMX26_02181 - GTP cyclohydrolase 1 type 2, at 2,234,478 to 2,234,792 _02181 MPMX26_02182: MPMX26_02182 - hypothetical protein, at 2,234,911 to 2,235,762 _02182 Position (kb) 2234 2235Strain fitness (log2 ratio) -1 0 1 2at 2233.512 kb on + strandat 2233.645 kb on + strand, within MPMX26_02180at 2233.702 kb on + strand, within MPMX26_02180at 2233.891 kb on + strand, within MPMX26_02180at 2233.899 kb on + strand, within MPMX26_02180at 2233.964 kb on + strand, within MPMX26_02180at 2234.013 kb on + strand, within MPMX26_02180at 2234.023 kb on + strand, within MPMX26_02180at 2234.061 kb on + strand, within MPMX26_02180at 2234.061 kb on + strand, within MPMX26_02180at 2234.094 kb on + strand, within MPMX26_02180at 2234.112 kb on + strand, within MPMX26_02180at 2234.184 kb on + strandat 2234.184 kb on + strandat 2234.184 kb on + strandat 2234.194 kb on + strandat 2234.211 kb on + strandat 2234.211 kb on + strandat 2235.717 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,233,512 + +0.9
2,233,645 + MPMX26_02180 0.23 -0.1
2,233,702 + MPMX26_02180 0.30 +0.2
2,233,891 + MPMX26_02180 0.54 +1.0
2,233,899 + MPMX26_02180 0.55 -0.2
2,233,964 + MPMX26_02180 0.63 -0.7
2,234,013 + MPMX26_02180 0.70 +0.0
2,234,023 + MPMX26_02180 0.71 +0.3
2,234,061 + MPMX26_02180 0.76 -0.1
2,234,061 + MPMX26_02180 0.76 -0.2
2,234,094 + MPMX26_02180 0.80 +0.1
2,234,112 + MPMX26_02180 0.82 -0.0
2,234,184 + +0.5
2,234,184 + +1.0
2,234,184 + -1.0
2,234,194 + +0.9
2,234,211 + +1.9
2,234,211 + -0.4
2,235,717 + +2.0

Or see this region's nucleotide sequence