Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02121

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_02120 and MPMX26_02121 are separated by 46 nucleotidesMPMX26_02121 and MPMX26_02122 are separated by 301 nucleotides MPMX26_02120: MPMX26_02120 - Acyl-coenzyme A dehydrogenase, at 2,174,075 to 2,176,567 _02120 MPMX26_02121: MPMX26_02121 - hypothetical protein, at 2,176,614 to 2,176,871 _02121 MPMX26_02122: MPMX26_02122 - hypothetical protein, at 2,177,173 to 2,178,384 _02122 Position (kb) 2176 2177Strain fitness (log2 ratio) -1 0 1at 2176.108 kb on + strand, within MPMX26_02120at 2177.250 kb on + strandat 2177.278 kb on + strandat 2177.298 kb on + strand, within MPMX26_02122at 2177.382 kb on + strand, within MPMX26_02122at 2177.382 kb on + strand, within MPMX26_02122at 2177.550 kb on + strand, within MPMX26_02122at 2177.574 kb on + strand, within MPMX26_02122at 2177.574 kb on + strand, within MPMX26_02122at 2177.574 kb on + strand, within MPMX26_02122at 2177.643 kb on + strand, within MPMX26_02122at 2177.659 kb on - strand, within MPMX26_02122at 2177.701 kb on + strand, within MPMX26_02122at 2177.871 kb on + strand, within MPMX26_02122

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,176,108 + MPMX26_02120 0.82 +0.2
2,177,250 + +0.0
2,177,278 + -0.3
2,177,298 + MPMX26_02122 0.10 -0.2
2,177,382 + MPMX26_02122 0.17 +0.0
2,177,382 + MPMX26_02122 0.17 +0.3
2,177,550 + MPMX26_02122 0.31 +0.4
2,177,574 + MPMX26_02122 0.33 -0.3
2,177,574 + MPMX26_02122 0.33 -1.3
2,177,574 + MPMX26_02122 0.33 +0.2
2,177,643 + MPMX26_02122 0.39 -0.6
2,177,659 - MPMX26_02122 0.40 +0.9
2,177,701 + MPMX26_02122 0.44 -0.1
2,177,871 + MPMX26_02122 0.58 +0.4

Or see this region's nucleotide sequence