Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01965

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX26_01963 and MPMX26_01964 are separated by 27 nucleotidesMPMX26_01964 and MPMX26_01965 are separated by 217 nucleotidesMPMX26_01965 and MPMX26_01966 overlap by 1 nucleotidesMPMX26_01966 and MPMX26_01967 overlap by 17 nucleotides MPMX26_01963: MPMX26_01963 - Outer membrane protein TolC, at 2,019,468 to 2,020,415 _01963 MPMX26_01964: MPMX26_01964 - hypothetical protein, at 2,020,443 to 2,020,976 _01964 MPMX26_01965: MPMX26_01965 - Lipopolysaccharide export system ATP-binding protein LptB, at 2,021,194 to 2,021,940 _01965 MPMX26_01966: MPMX26_01966 - Lipopolysaccharide export system protein LptA, at 2,021,940 to 2,022,506 _01966 MPMX26_01967: MPMX26_01967 - Lipopolysaccharide export system protein LptC, at 2,022,490 to 2,023,038 _01967 Position (kb) 2021 2022Strain fitness (log2 ratio) -1 0 1at 2020.942 kb on - strandat 2021.158 kb on - strandat 2021.168 kb on - strandat 2021.168 kb on - strandat 2021.168 kb on - strandat 2021.209 kb on - strandat 2021.209 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
2,020,942 - -0.5
2,021,158 - +0.2
2,021,168 - +1.0
2,021,168 - +0.9
2,021,168 - -0.6
2,021,209 - +0.8
2,021,209 - +1.6

Or see this region's nucleotide sequence