Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01935

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01934 and MPMX26_01935 are separated by 96 nucleotidesMPMX26_01935 and MPMX26_01936 overlap by 4 nucleotides MPMX26_01934: MPMX26_01934 - Transcriptional activatory protein BadR, at 1,980,403 to 1,980,885 _01934 MPMX26_01935: MPMX26_01935 - hypothetical protein, at 1,980,982 to 1,981,335 _01935 MPMX26_01936: MPMX26_01936 - hypothetical protein, at 1,981,332 to 1,982,849 _01936 Position (kb) 1980 1981 1982Strain fitness (log2 ratio) -2 -1 0 1at 1980.490 kb on + strand, within MPMX26_01934at 1980.534 kb on + strand, within MPMX26_01934at 1980.534 kb on + strand, within MPMX26_01934at 1980.534 kb on + strand, within MPMX26_01934at 1980.534 kb on + strand, within MPMX26_01934at 1980.534 kb on + strand, within MPMX26_01934at 1980.534 kb on + strand, within MPMX26_01934at 1980.536 kb on + strand, within MPMX26_01934at 1980.544 kb on + strand, within MPMX26_01934at 1980.546 kb on + strand, within MPMX26_01934at 1980.546 kb on + strand, within MPMX26_01934at 1980.553 kb on + strand, within MPMX26_01934at 1980.553 kb on + strand, within MPMX26_01934at 1980.553 kb on + strand, within MPMX26_01934at 1980.553 kb on + strand, within MPMX26_01934at 1980.640 kb on + strand, within MPMX26_01934at 1980.683 kb on + strand, within MPMX26_01934at 1980.688 kb on + strand, within MPMX26_01934at 1980.693 kb on + strand, within MPMX26_01934at 1980.693 kb on + strand, within MPMX26_01934at 1980.730 kb on + strand, within MPMX26_01934at 1980.730 kb on + strand, within MPMX26_01934at 1980.730 kb on + strand, within MPMX26_01934at 1980.730 kb on + strand, within MPMX26_01934at 1980.744 kb on + strand, within MPMX26_01934at 1981.440 kb on + strandat 1981.499 kb on - strand, within MPMX26_01936at 1981.512 kb on + strand, within MPMX26_01936

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,980,490 + MPMX26_01934 0.18 -0.1
1,980,534 + MPMX26_01934 0.27 -0.3
1,980,534 + MPMX26_01934 0.27 +0.3
1,980,534 + MPMX26_01934 0.27 +0.8
1,980,534 + MPMX26_01934 0.27 -0.6
1,980,534 + MPMX26_01934 0.27 -0.7
1,980,534 + MPMX26_01934 0.27 +0.4
1,980,536 + MPMX26_01934 0.28 +0.1
1,980,544 + MPMX26_01934 0.29 +0.3
1,980,546 + MPMX26_01934 0.30 +0.2
1,980,546 + MPMX26_01934 0.30 -1.0
1,980,553 + MPMX26_01934 0.31 -0.1
1,980,553 + MPMX26_01934 0.31 +0.3
1,980,553 + MPMX26_01934 0.31 -1.9
1,980,553 + MPMX26_01934 0.31 +0.3
1,980,640 + MPMX26_01934 0.49 -0.6
1,980,683 + MPMX26_01934 0.58 -0.5
1,980,688 + MPMX26_01934 0.59 -0.1
1,980,693 + MPMX26_01934 0.60 +0.1
1,980,693 + MPMX26_01934 0.60 -0.4
1,980,730 + MPMX26_01934 0.68 -0.3
1,980,730 + MPMX26_01934 0.68 -0.3
1,980,730 + MPMX26_01934 0.68 +1.6
1,980,730 + MPMX26_01934 0.68 +0.2
1,980,744 + MPMX26_01934 0.71 -0.1
1,981,440 + +0.5
1,981,499 - MPMX26_01936 0.11 -0.1
1,981,512 + MPMX26_01936 0.12 -0.9

Or see this region's nucleotide sequence