Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01205

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01203 and MPMX26_01204 are separated by 61 nucleotidesMPMX26_01204 and MPMX26_01205 are separated by 108 nucleotidesMPMX26_01205 and MPMX26_01206 are separated by 136 nucleotidesMPMX26_01206 and MPMX26_01207 overlap by 11 nucleotides MPMX26_01203: MPMX26_01203 - Ribosomal small subunit pseudouridine synthase A, at 1,278,123 to 1,278,830 _01203 MPMX26_01204: MPMX26_01204 - hypothetical protein, at 1,278,892 to 1,279,206 _01204 MPMX26_01205: MPMX26_01205 - hypothetical protein, at 1,279,315 to 1,280,226 _01205 MPMX26_01206: MPMX26_01206 - tRNA threonylcarbamoyladenosine biosynthesis protein TsaE, at 1,280,363 to 1,280,848 _01206 MPMX26_01207: MPMX26_01207 - DNA mismatch repair protein MutL, at 1,280,838 to 1,282,802 _01207 Position (kb) 1279 1280 1281Strain fitness (log2 ratio) -1 0 1at 1278.434 kb on + strand, within MPMX26_01203at 1278.434 kb on + strand, within MPMX26_01203at 1278.434 kb on + strand, within MPMX26_01203at 1278.452 kb on + strand, within MPMX26_01203at 1278.452 kb on + strand, within MPMX26_01203at 1278.482 kb on + strand, within MPMX26_01203at 1278.542 kb on + strand, within MPMX26_01203at 1278.641 kb on + strand, within MPMX26_01203at 1278.785 kb on + strandat 1278.805 kb on - strandat 1278.928 kb on - strand, within MPMX26_01204at 1278.982 kb on - strand, within MPMX26_01204at 1278.989 kb on - strand, within MPMX26_01204at 1278.990 kb on - strand, within MPMX26_01204at 1279.009 kb on - strand, within MPMX26_01204at 1279.113 kb on - strand, within MPMX26_01204at 1279.121 kb on - strand, within MPMX26_01204at 1279.151 kb on - strand, within MPMX26_01204at 1279.183 kb on - strandat 1279.885 kb on - strand, within MPMX26_01205at 1280.085 kb on - strand, within MPMX26_01205at 1280.121 kb on - strand, within MPMX26_01205at 1280.804 kb on + strandat 1280.847 kb on + strandat 1280.927 kb on + strandat 1280.940 kb on + strandat 1280.940 kb on + strandat 1280.940 kb on + strandat 1280.940 kb on + strandat 1281.061 kb on + strand, within MPMX26_01207at 1281.108 kb on + strand, within MPMX26_01207at 1281.108 kb on + strand, within MPMX26_01207at 1281.108 kb on + strand, within MPMX26_01207at 1281.116 kb on + strand, within MPMX26_01207at 1281.147 kb on + strand, within MPMX26_01207at 1281.147 kb on + strand, within MPMX26_01207at 1281.186 kb on + strand, within MPMX26_01207at 1281.186 kb on + strand, within MPMX26_01207at 1281.198 kb on + strand, within MPMX26_01207at 1281.198 kb on + strand, within MPMX26_01207at 1281.213 kb on + strand, within MPMX26_01207

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,278,434 + MPMX26_01203 0.44 +1.1
1,278,434 + MPMX26_01203 0.44 +0.6
1,278,434 + MPMX26_01203 0.44 -0.2
1,278,452 + MPMX26_01203 0.46 -0.4
1,278,452 + MPMX26_01203 0.46 +0.4
1,278,482 + MPMX26_01203 0.51 +0.1
1,278,542 + MPMX26_01203 0.59 -0.4
1,278,641 + MPMX26_01203 0.73 +1.6
1,278,785 + -0.6
1,278,805 - +0.4
1,278,928 - MPMX26_01204 0.11 +0.3
1,278,982 - MPMX26_01204 0.29 -0.3
1,278,989 - MPMX26_01204 0.31 +0.3
1,278,990 - MPMX26_01204 0.31 +0.3
1,279,009 - MPMX26_01204 0.37 +0.7
1,279,113 - MPMX26_01204 0.70 -0.1
1,279,121 - MPMX26_01204 0.73 -0.3
1,279,151 - MPMX26_01204 0.82 +0.2
1,279,183 - -0.8
1,279,885 - MPMX26_01205 0.62 -0.4
1,280,085 - MPMX26_01205 0.84 +0.9
1,280,121 - MPMX26_01205 0.88 +1.2
1,280,804 + +0.5
1,280,847 + -0.1
1,280,927 + +0.4
1,280,940 + -1.7
1,280,940 + +0.8
1,280,940 + +1.4
1,280,940 + -0.0
1,281,061 + MPMX26_01207 0.11 -0.9
1,281,108 + MPMX26_01207 0.14 -0.8
1,281,108 + MPMX26_01207 0.14 +1.3
1,281,108 + MPMX26_01207 0.14 +0.2
1,281,116 + MPMX26_01207 0.14 -0.0
1,281,147 + MPMX26_01207 0.16 +0.5
1,281,147 + MPMX26_01207 0.16 +0.3
1,281,186 + MPMX26_01207 0.18 +0.1
1,281,186 + MPMX26_01207 0.18 +0.1
1,281,198 + MPMX26_01207 0.18 +0.5
1,281,198 + MPMX26_01207 0.18 +1.1
1,281,213 + MPMX26_01207 0.19 -0.1

Or see this region's nucleotide sequence