Experiment: Ying_OrganicAcid7 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF944 and GFF945 are separated by 10 nucleotides GFF945 and GFF946 are separated by 2 nucleotides
GFF944 - Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4), at 677,590 to 679,188
GFF944
GFF945 - Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4), at 679,199 to 679,699
GFF945
GFF946 - Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4), at 679,702 to 681,171
GFF946
Position (kb) 679
680 Strain fitness (log2 ratio) -2
-1
0
1 at 678.201 kb on - strand, within GFF944 at 678.207 kb on - strand, within GFF944 at 678.242 kb on + strand, within GFF944 at 678.347 kb on + strand, within GFF944 at 678.348 kb on - strand, within GFF944 at 678.350 kb on + strand, within GFF944 at 678.351 kb on - strand, within GFF944 at 678.488 kb on - strand, within GFF944 at 678.597 kb on - strand, within GFF944 at 678.617 kb on + strand, within GFF944 at 678.618 kb on - strand, within GFF944 at 678.720 kb on - strand, within GFF944 at 678.998 kb on - strand, within GFF944 at 678.998 kb on - strand, within GFF944 at 678.998 kb on - strand, within GFF944 at 678.998 kb on - strand, within GFF944 at 679.260 kb on + strand, within GFF945 at 679.261 kb on - strand, within GFF945 at 679.653 kb on - strand at 679.653 kb on - strand at 679.654 kb on - strand at 679.687 kb on - strand at 679.795 kb on + strand at 679.795 kb on + strand at 680.007 kb on + strand, within GFF946 at 680.156 kb on + strand, within GFF946 at 680.207 kb on + strand, within GFF946 at 680.236 kb on + strand, within GFF946 at 680.237 kb on - strand, within GFF946 at 680.343 kb on - strand, within GFF946 at 680.343 kb on - strand, within GFF946 at 680.372 kb on + strand, within GFF946 at 680.373 kb on - strand, within GFF946 at 680.413 kb on - strand, within GFF946 at 680.570 kb on + strand, within GFF946 at 680.571 kb on - strand, within GFF946 at 680.571 kb on - strand, within GFF946
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 1 remove 678,201 - GFF944 0.38 -0.7 678,207 - GFF944 0.39 +0.2 678,242 + GFF944 0.41 +0.2 678,347 + GFF944 0.47 +0.5 678,348 - GFF944 0.47 +0.0 678,350 + GFF944 0.48 -0.9 678,351 - GFF944 0.48 -0.3 678,488 - GFF944 0.56 +0.4 678,597 - GFF944 0.63 -0.2 678,617 + GFF944 0.64 -2.0 678,618 - GFF944 0.64 -0.6 678,720 - GFF944 0.71 -1.4 678,998 - GFF944 0.88 -0.2 678,998 - GFF944 0.88 +0.3 678,998 - GFF944 0.88 -0.3 678,998 - GFF944 0.88 -0.9 679,260 + GFF945 0.12 +0.1 679,261 - GFF945 0.12 -1.0 679,653 - +0.0 679,653 - -0.4 679,654 - +0.4 679,687 - +1.3 679,795 + -0.2 679,795 + -0.7 680,007 + GFF946 0.21 -1.4 680,156 + GFF946 0.31 +0.0 680,207 + GFF946 0.34 -0.9 680,236 + GFF946 0.36 +0.7 680,237 - GFF946 0.36 +0.1 680,343 - GFF946 0.44 -0.0 680,343 - GFF946 0.44 +1.3 680,372 + GFF946 0.46 -0.6 680,373 - GFF946 0.46 -0.2 680,413 - GFF946 0.48 -0.5 680,570 + GFF946 0.59 -0.4 680,571 - GFF946 0.59 -0.2 680,571 - GFF946 0.59 -0.7
Or see this region's nucleotide sequence