Experiment: Ying_OrganicAcid7 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF861 and GFF862 are separated by 661 nucleotides GFF862 and GFF863 are separated by 840 nucleotides
GFF861 - Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4), at 580,101 to 580,883
GFF861
GFF862 - Possible monoamine oxidase, at 581,545 to 582,606
GFF862
GFF863 - Glutathione S-transferase (EC 2.5.1.18), at 583,447 to 584,067
GFF863
Position (kb) 581
582
583 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 580.557 kb on + strand, within GFF861 at 580.557 kb on + strand, within GFF861 at 580.557 kb on + strand, within GFF861 at 580.558 kb on - strand, within GFF861 at 580.629 kb on + strand, within GFF861 at 580.629 kb on + strand, within GFF861 at 580.629 kb on + strand, within GFF861 at 580.630 kb on - strand, within GFF861 at 580.630 kb on - strand, within GFF861 at 580.807 kb on + strand at 580.807 kb on + strand at 580.807 kb on + strand at 580.807 kb on + strand at 580.808 kb on - strand at 580.815 kb on - strand at 580.815 kb on - strand at 580.881 kb on + strand at 580.881 kb on + strand at 580.882 kb on - strand at 580.921 kb on + strand at 580.921 kb on + strand at 580.921 kb on + strand at 580.922 kb on - strand at 580.973 kb on - strand at 581.034 kb on - strand at 581.086 kb on + strand at 581.087 kb on - strand at 581.362 kb on + strand at 581.362 kb on + strand at 581.362 kb on + strand at 581.363 kb on - strand at 581.458 kb on + strand at 581.458 kb on + strand at 581.458 kb on + strand at 581.458 kb on + strand at 581.459 kb on - strand at 581.459 kb on - strand at 581.459 kb on - strand at 581.459 kb on - strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.554 kb on + strand at 581.555 kb on - strand at 581.555 kb on - strand at 581.555 kb on - strand at 581.555 kb on - strand at 581.555 kb on - strand at 581.555 kb on - strand at 581.563 kb on + strand at 581.563 kb on + strand at 581.564 kb on - strand at 581.564 kb on - strand at 581.609 kb on + strand at 581.609 kb on + strand at 581.609 kb on + strand at 581.610 kb on - strand at 581.610 kb on - strand at 581.610 kb on - strand at 581.610 kb on - strand at 581.610 kb on - strand at 581.622 kb on + strand at 581.622 kb on + strand at 581.694 kb on - strand, within GFF862 at 581.694 kb on - strand, within GFF862 at 581.750 kb on + strand, within GFF862 at 581.750 kb on + strand, within GFF862 at 581.750 kb on + strand, within GFF862 at 581.750 kb on + strand, within GFF862 at 581.751 kb on - strand, within GFF862 at 581.751 kb on - strand, within GFF862 at 581.751 kb on - strand, within GFF862 at 581.775 kb on + strand, within GFF862 at 581.775 kb on + strand, within GFF862 at 581.775 kb on + strand, within GFF862 at 581.775 kb on + strand, within GFF862 at 581.775 kb on + strand, within GFF862 at 581.775 kb on + strand, within GFF862 at 581.775 kb on + strand, within GFF862 at 581.775 kb on + strand, within GFF862 at 581.775 kb on + strand, within GFF862 at 581.775 kb on + strand, within GFF862 at 581.776 kb on - strand, within GFF862 at 581.776 kb on - strand, within GFF862 at 581.776 kb on - strand, within GFF862 at 581.776 kb on - strand, within GFF862 at 581.776 kb on - strand, within GFF862 at 581.776 kb on - strand, within GFF862 at 581.824 kb on + strand, within GFF862 at 581.824 kb on + strand, within GFF862 at 581.824 kb on + strand, within GFF862 at 581.824 kb on + strand, within GFF862 at 581.824 kb on + strand, within GFF862 at 581.824 kb on + strand, within GFF862 at 581.824 kb on + strand, within GFF862 at 581.824 kb on + strand, within GFF862 at 581.824 kb on + strand, within GFF862 at 581.824 kb on + strand, within GFF862 at 581.825 kb on - strand, within GFF862 at 581.825 kb on - strand, within GFF862 at 581.825 kb on - strand, within GFF862 at 581.825 kb on - strand, within GFF862 at 581.825 kb on - strand, within GFF862 at 581.825 kb on - strand, within GFF862 at 581.825 kb on - strand, within GFF862 at 581.894 kb on + strand, within GFF862 at 581.894 kb on + strand, within GFF862 at 581.894 kb on + strand, within GFF862 at 581.894 kb on + strand, within GFF862 at 581.894 kb on + strand, within GFF862 at 581.894 kb on + strand, within GFF862 at 581.894 kb on + strand, within GFF862 at 581.894 kb on + strand, within GFF862 at 581.894 kb on + strand, within GFF862 at 581.895 kb on - strand, within GFF862 at 581.895 kb on - strand, within GFF862 at 581.999 kb on + strand, within GFF862 at 581.999 kb on + strand, within GFF862 at 581.999 kb on + strand, within GFF862 at 581.999 kb on + strand, within GFF862 at 581.999 kb on + strand, within GFF862 at 581.999 kb on + strand, within GFF862 at 581.999 kb on + strand, within GFF862 at 582.000 kb on - strand, within GFF862 at 582.000 kb on - strand, within GFF862 at 582.000 kb on - strand, within GFF862 at 582.000 kb on - strand, within GFF862 at 582.000 kb on - strand, within GFF862 at 582.000 kb on - strand, within GFF862 at 582.084 kb on + strand, within GFF862 at 582.097 kb on + strand, within GFF862 at 582.098 kb on - strand, within GFF862 at 582.098 kb on - strand, within GFF862 at 582.098 kb on - strand, within GFF862 at 582.193 kb on + strand, within GFF862 at 582.194 kb on - strand, within GFF862 at 582.198 kb on + strand, within GFF862 at 582.199 kb on - strand, within GFF862 at 582.199 kb on - strand, within GFF862 at 582.199 kb on - strand, within GFF862 at 582.309 kb on - strand, within GFF862 at 582.309 kb on - strand, within GFF862 at 582.309 kb on - strand, within GFF862 at 582.391 kb on + strand, within GFF862 at 582.391 kb on + strand, within GFF862 at 582.391 kb on + strand, within GFF862 at 582.391 kb on + strand, within GFF862 at 582.391 kb on + strand, within GFF862 at 582.392 kb on - strand, within GFF862 at 582.392 kb on - strand, within GFF862 at 582.392 kb on - strand, within GFF862 at 582.392 kb on - strand, within GFF862 at 582.392 kb on - strand, within GFF862 at 582.672 kb on + strand at 582.673 kb on - strand at 582.673 kb on - strand at 582.673 kb on - strand at 582.673 kb on - strand at 582.704 kb on + strand at 582.704 kb on + strand at 582.704 kb on + strand at 582.704 kb on + strand at 582.705 kb on - strand at 582.705 kb on - strand at 582.705 kb on - strand at 582.705 kb on - strand at 582.705 kb on - strand at 582.705 kb on - strand at 582.728 kb on + strand at 582.729 kb on - strand at 582.739 kb on - strand at 582.765 kb on - strand at 582.863 kb on + strand at 582.863 kb on + strand at 582.863 kb on + strand at 582.864 kb on - strand at 582.893 kb on + strand at 582.894 kb on - strand at 582.894 kb on - strand at 582.894 kb on - strand at 582.894 kb on - strand at 582.908 kb on + strand at 582.960 kb on + strand at 582.960 kb on + strand at 582.960 kb on + strand at 582.960 kb on + strand at 582.960 kb on + strand at 582.960 kb on + strand at 582.961 kb on - strand at 582.961 kb on - strand at 582.961 kb on - strand at 582.961 kb on - strand at 582.961 kb on - strand at 582.987 kb on + strand at 582.987 kb on + strand at 582.987 kb on + strand at 582.987 kb on + strand at 582.987 kb on + strand at 582.987 kb on + strand at 582.987 kb on + strand at 582.988 kb on - strand at 582.988 kb on - strand at 582.988 kb on - strand at 582.988 kb on - strand at 582.989 kb on + strand at 582.989 kb on + strand at 582.989 kb on + strand at 582.989 kb on + strand at 582.989 kb on + strand at 582.989 kb on + strand at 582.990 kb on - strand at 582.990 kb on - strand at 582.990 kb on - strand at 582.990 kb on - strand at 582.990 kb on - strand at 582.990 kb on - strand at 582.990 kb on - strand at 582.990 kb on - strand at 582.990 kb on - strand at 582.990 kb on - strand at 582.991 kb on - strand at 583.082 kb on + strand at 583.123 kb on + strand at 583.124 kb on - strand at 583.124 kb on - strand at 583.124 kb on - strand at 583.124 kb on - strand at 583.152 kb on + strand at 583.152 kb on + strand at 583.152 kb on + strand at 583.152 kb on + strand at 583.152 kb on + strand at 583.152 kb on + strand at 583.152 kb on + strand at 583.152 kb on + strand at 583.152 kb on + strand at 583.152 kb on + strand at 583.152 kb on + strand at 583.152 kb on + strand at 583.152 kb on + strand at 583.152 kb on + strand at 583.152 kb on + strand at 583.153 kb on + strand at 583.153 kb on - strand at 583.153 kb on - strand at 583.153 kb on - strand at 583.153 kb on - strand at 583.153 kb on - strand at 583.153 kb on - strand at 583.153 kb on - strand at 583.153 kb on - strand at 583.153 kb on - strand at 583.153 kb on - strand at 583.153 kb on - strand at 583.153 kb on - strand at 583.153 kb on - strand at 583.153 kb on - strand at 583.153 kb on - strand at 583.153 kb on - strand at 583.225 kb on + strand at 583.231 kb on + strand at 583.231 kb on + strand at 583.231 kb on + strand at 583.231 kb on + strand at 583.231 kb on + strand at 583.231 kb on + strand at 583.231 kb on + strand at 583.232 kb on - strand at 583.232 kb on - strand at 583.232 kb on - strand at 583.232 kb on - strand at 583.232 kb on - strand at 583.232 kb on - strand at 583.232 kb on - strand at 583.232 kb on - strand at 583.232 kb on - strand at 583.232 kb on - strand at 583.232 kb on - strand at 583.232 kb on - strand at 583.232 kb on - strand at 583.260 kb on + strand at 583.322 kb on + strand at 583.322 kb on + strand at 583.322 kb on + strand at 583.323 kb on - strand at 583.323 kb on - strand at 583.427 kb on + strand at 583.428 kb on - strand at 583.575 kb on + strand, within GFF863
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 1 remove 580,557 + GFF861 0.58 -0.7 580,557 + GFF861 0.58 -0.3 580,557 + GFF861 0.58 -0.7 580,558 - GFF861 0.58 +0.1 580,629 + GFF861 0.67 +0.1 580,629 + GFF861 0.67 -0.7 580,629 + GFF861 0.67 +0.1 580,630 - GFF861 0.68 -0.1 580,630 - GFF861 0.68 -0.1 580,807 + -0.4 580,807 + +0.4 580,807 + +0.3 580,807 + +0.5 580,808 - +0.2 580,815 - -0.2 580,815 - -0.8 580,881 + +0.3 580,881 + +0.1 580,882 - +0.1 580,921 + +0.4 580,921 + -0.7 580,921 + +0.5 580,922 - -0.2 580,973 - -0.0 581,034 - +0.1 581,086 + -0.0 581,087 - -1.2 581,362 + -0.5 581,362 + +0.2 581,362 + +0.2 581,363 - -0.0 581,458 + -0.6 581,458 + -1.4 581,458 + -0.2 581,458 + -0.1 581,459 - -0.4 581,459 - +0.3 581,459 - +0.1 581,459 - +1.3 581,554 + -0.4 581,554 + +1.6 581,554 + +0.1 581,554 + -0.1 581,554 + -0.3 581,554 + -0.4 581,554 + -0.9 581,555 - -0.3 581,555 - -1.4 581,555 - -0.8 581,555 - +0.7 581,555 - +0.7 581,555 - -0.2 581,563 + -0.7 581,563 + +0.1 581,564 - -0.3 581,564 - -0.1 581,609 + -1.2 581,609 + +0.8 581,609 + -0.3 581,610 - -0.3 581,610 - -0.3 581,610 - -0.1 581,610 - -1.7 581,610 - +0.3 581,622 + -0.1 581,622 + +0.6 581,694 - GFF862 0.14 +0.4 581,694 - GFF862 0.14 -0.3 581,750 + GFF862 0.19 +0.1 581,750 + GFF862 0.19 -0.1 581,750 + GFF862 0.19 +0.3 581,750 + GFF862 0.19 -0.4 581,751 - GFF862 0.19 -0.2 581,751 - GFF862 0.19 -0.2 581,751 - GFF862 0.19 -0.9 581,775 + GFF862 0.22 +0.4 581,775 + GFF862 0.22 -1.6 581,775 + GFF862 0.22 +0.4 581,775 + GFF862 0.22 +0.3 581,775 + GFF862 0.22 -0.1 581,775 + GFF862 0.22 -0.7 581,775 + GFF862 0.22 -0.5 581,775 + GFF862 0.22 -1.3 581,775 + GFF862 0.22 -0.1 581,775 + GFF862 0.22 +0.0 581,776 - GFF862 0.22 -0.0 581,776 - GFF862 0.22 -0.1 581,776 - GFF862 0.22 -0.0 581,776 - GFF862 0.22 -0.0 581,776 - GFF862 0.22 +0.4 581,776 - GFF862 0.22 +0.4 581,824 + GFF862 0.26 -1.9 581,824 + GFF862 0.26 -0.1 581,824 + GFF862 0.26 +0.6 581,824 + GFF862 0.26 -0.6 581,824 + GFF862 0.26 +1.4 581,824 + GFF862 0.26 +0.7 581,824 + GFF862 0.26 -0.1 581,824 + GFF862 0.26 +0.3 581,824 + GFF862 0.26 -0.2 581,824 + GFF862 0.26 +0.1 581,825 - GFF862 0.26 +0.1 581,825 - GFF862 0.26 -0.2 581,825 - GFF862 0.26 -0.0 581,825 - GFF862 0.26 +0.1 581,825 - GFF862 0.26 +0.7 581,825 - GFF862 0.26 -0.4 581,825 - GFF862 0.26 -0.7 581,894 + GFF862 0.33 +0.0 581,894 + GFF862 0.33 +0.3 581,894 + GFF862 0.33 +0.3 581,894 + GFF862 0.33 -0.0 581,894 + GFF862 0.33 -0.0 581,894 + GFF862 0.33 +0.8 581,894 + GFF862 0.33 +0.5 581,894 + GFF862 0.33 -1.0 581,894 + GFF862 0.33 +0.4 581,895 - GFF862 0.33 +0.6 581,895 - GFF862 0.33 -0.2 581,999 + GFF862 0.43 -0.1 581,999 + GFF862 0.43 -1.1 581,999 + GFF862 0.43 +0.4 581,999 + GFF862 0.43 +0.0 581,999 + GFF862 0.43 -0.4 581,999 + GFF862 0.43 -0.0 581,999 + GFF862 0.43 +0.4 582,000 - GFF862 0.43 -0.7 582,000 - GFF862 0.43 -0.6 582,000 - GFF862 0.43 +0.1 582,000 - GFF862 0.43 +0.4 582,000 - GFF862 0.43 -0.0 582,000 - GFF862 0.43 -0.4 582,084 + GFF862 0.51 -1.6 582,097 + GFF862 0.52 -2.7 582,098 - GFF862 0.52 +0.3 582,098 - GFF862 0.52 -0.0 582,098 - GFF862 0.52 -0.3 582,193 + GFF862 0.61 -0.3 582,194 - GFF862 0.61 +1.1 582,198 + GFF862 0.61 +0.5 582,199 - GFF862 0.62 -0.9 582,199 - GFF862 0.62 +0.5 582,199 - GFF862 0.62 -0.0 582,309 - GFF862 0.72 -0.3 582,309 - GFF862 0.72 -0.8 582,309 - GFF862 0.72 -0.1 582,391 + GFF862 0.80 -0.0 582,391 + GFF862 0.80 -0.2 582,391 + GFF862 0.80 -0.1 582,391 + GFF862 0.80 -3.6 582,391 + GFF862 0.80 +1.3 582,392 - GFF862 0.80 -0.1 582,392 - GFF862 0.80 -0.4 582,392 - GFF862 0.80 -0.1 582,392 - GFF862 0.80 -0.6 582,392 - GFF862 0.80 +0.3 582,672 + -0.3 582,673 - -0.6 582,673 - -0.4 582,673 - -0.6 582,673 - +0.3 582,704 + -0.3 582,704 + -0.5 582,704 + -0.9 582,704 + -0.0 582,705 - +0.8 582,705 - -0.3 582,705 - -0.2 582,705 - +0.7 582,705 - -0.5 582,705 - -0.0 582,728 + -0.2 582,729 - -0.3 582,739 - -0.7 582,765 - +0.4 582,863 + -0.3 582,863 + +0.1 582,863 + -0.5 582,864 - -0.0 582,893 + +0.5 582,894 - +0.8 582,894 - +0.4 582,894 - +0.4 582,894 - -0.2 582,908 + +0.5 582,960 + +1.0 582,960 + +1.3 582,960 + -0.3 582,960 + +0.3 582,960 + +0.3 582,960 + -0.2 582,961 - -0.5 582,961 - -0.8 582,961 - +0.2 582,961 - -0.1 582,961 - -0.6 582,987 + -0.9 582,987 + +0.5 582,987 + -0.3 582,987 + +1.0 582,987 + -0.0 582,987 + -0.0 582,987 + -0.4 582,988 - -1.2 582,988 - -0.1 582,988 - +0.1 582,988 - +0.2 582,989 + +0.5 582,989 + -0.0 582,989 + +0.3 582,989 + -0.7 582,989 + -1.7 582,989 + -0.8 582,990 - -0.1 582,990 - -0.5 582,990 - +0.1 582,990 - -0.1 582,990 - +0.1 582,990 - +0.5 582,990 - -0.2 582,990 - -0.9 582,990 - -0.1 582,990 - -0.0 582,991 - +0.3 583,082 + +0.3 583,123 + -0.4 583,124 - -0.1 583,124 - -0.5 583,124 - -1.9 583,124 - +0.2 583,152 + -1.0 583,152 + +1.2 583,152 + -0.2 583,152 + -0.0 583,152 + -0.5 583,152 + +0.1 583,152 + -2.1 583,152 + -1.2 583,152 + -0.2 583,152 + +0.1 583,152 + -0.0 583,152 + +0.2 583,152 + -0.4 583,152 + +0.4 583,152 + +0.2 583,153 + -0.3 583,153 - +0.9 583,153 - +0.6 583,153 - -1.1 583,153 - +0.6 583,153 - +0.1 583,153 - +0.5 583,153 - +0.3 583,153 - +0.7 583,153 - +0.1 583,153 - -0.0 583,153 - -0.1 583,153 - -0.1 583,153 - -0.1 583,153 - -0.3 583,153 - +0.1 583,153 - +0.5 583,225 + +0.3 583,231 + -1.5 583,231 + +0.4 583,231 + -0.0 583,231 + -0.6 583,231 + -0.0 583,231 + +0.5 583,231 + -0.2 583,232 - +1.1 583,232 - +1.9 583,232 - +0.3 583,232 - -0.2 583,232 - -0.9 583,232 - +1.0 583,232 - +0.8 583,232 - +0.2 583,232 - -0.0 583,232 - -0.4 583,232 - -0.1 583,232 - +0.6 583,232 - +0.5 583,260 + -0.1 583,322 + -0.6 583,322 + -0.0 583,322 + -1.0 583,323 - +0.2 583,323 - -0.5 583,427 + -0.2 583,428 - +0.7 583,575 + GFF863 0.21 +0.2
Or see this region's nucleotide sequence