Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF697

Experiment: Ying_OrganicAcid7 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF695 and GFF696 overlap by 20 nucleotidesGFF696 and GFF697 are separated by 1 nucleotidesGFF697 and GFF698 overlap by 4 nucleotidesGFF698 and GFF699 are separated by 10 nucleotides GFF695 - Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion, at 374,736 to 375,476 GFF695 GFF696 - Probable transmembrane protein, at 375,457 to 376,137 GFF696 GFF697 - Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA, at 376,139 to 377,302 GFF697 GFF698 - Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB, at 377,299 to 378,204 GFF698 GFF699 - Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone, at 378,215 to 378,811 GFF699 Position (kb) 376 377 378Strain fitness (log2 ratio) -2 -1 0 1 2at 375.187 kb on + strand, within GFF695at 375.187 kb on + strand, within GFF695at 375.187 kb on + strand, within GFF695at 375.187 kb on + strand, within GFF695at 375.188 kb on - strand, within GFF695at 375.188 kb on - strand, within GFF695at 375.188 kb on - strand, within GFF695at 375.188 kb on - strand, within GFF695at 375.188 kb on - strand, within GFF695at 375.188 kb on - strand, within GFF695at 375.190 kb on - strand, within GFF695at 375.230 kb on + strand, within GFF695at 375.230 kb on + strand, within GFF695at 375.366 kb on + strand, within GFF695at 375.366 kb on + strand, within GFF695at 375.411 kb on + strandat 375.411 kb on + strandat 375.411 kb on + strandat 375.411 kb on + strandat 375.611 kb on - strand, within GFF696at 375.619 kb on + strand, within GFF696at 375.619 kb on + strand, within GFF696at 375.619 kb on + strand, within GFF696at 375.619 kb on + strand, within GFF696at 375.619 kb on + strand, within GFF696at 375.619 kb on + strand, within GFF696at 375.619 kb on + strand, within GFF696at 375.619 kb on + strand, within GFF696at 375.620 kb on - strand, within GFF696at 375.622 kb on + strand, within GFF696at 375.622 kb on + strand, within GFF696at 375.622 kb on + strand, within GFF696at 375.622 kb on + strand, within GFF696at 375.622 kb on + strand, within GFF696at 375.622 kb on + strand, within GFF696at 375.623 kb on - strand, within GFF696at 375.623 kb on - strand, within GFF696at 375.623 kb on - strand, within GFF696at 375.652 kb on + strand, within GFF696at 375.652 kb on + strand, within GFF696at 375.652 kb on + strand, within GFF696at 375.652 kb on + strand, within GFF696at 375.653 kb on - strand, within GFF696at 375.805 kb on + strand, within GFF696at 375.805 kb on + strand, within GFF696at 375.806 kb on - strand, within GFF696at 376.003 kb on + strand, within GFF696at 376.003 kb on + strand, within GFF696at 376.003 kb on + strand, within GFF696at 376.003 kb on + strand, within GFF696at 376.003 kb on + strand, within GFF696at 376.003 kb on + strand, within GFF696at 376.003 kb on + strand, within GFF696at 376.004 kb on - strand, within GFF696at 376.004 kb on - strand, within GFF696at 376.157 kb on + strandat 376.157 kb on + strandat 376.157 kb on + strandat 376.594 kb on - strand, within GFF697at 376.594 kb on - strand, within GFF697at 376.721 kb on + strand, within GFF697at 376.847 kb on + strand, within GFF697at 376.847 kb on + strand, within GFF697at 376.847 kb on + strand, within GFF697at 376.848 kb on - strand, within GFF697at 376.848 kb on - strand, within GFF697at 376.848 kb on - strand, within GFF697at 376.997 kb on + strand, within GFF697at 376.997 kb on + strand, within GFF697at 376.998 kb on - strand, within GFF697at 377.018 kb on + strand, within GFF697at 377.018 kb on + strand, within GFF697at 377.019 kb on - strand, within GFF697at 377.654 kb on - strand, within GFF698at 377.707 kb on + strand, within GFF698at 377.708 kb on - strand, within GFF698at 377.719 kb on + strand, within GFF698at 377.720 kb on - strand, within GFF698at 377.896 kb on + strand, within GFF698at 377.912 kb on - strand, within GFF698at 377.984 kb on - strand, within GFF698at 378.088 kb on + strand, within GFF698at 378.196 kb on + strandat 378.196 kb on + strandat 378.196 kb on + strandat 378.196 kb on + strandat 378.196 kb on + strandat 378.197 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 1
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375,187 + GFF695 0.61 -0.4
375,187 + GFF695 0.61 -1.0
375,187 + GFF695 0.61 -1.4
375,187 + GFF695 0.61 -1.2
375,188 - GFF695 0.61 -0.4
375,188 - GFF695 0.61 +0.6
375,188 - GFF695 0.61 -0.2
375,188 - GFF695 0.61 -1.3
375,188 - GFF695 0.61 -0.2
375,188 - GFF695 0.61 -0.5
375,190 - GFF695 0.61 +0.8
375,230 + GFF695 0.67 -1.1
375,230 + GFF695 0.67 -1.2
375,366 + GFF695 0.85 -0.4
375,366 + GFF695 0.85 -0.3
375,411 + +2.2
375,411 + -1.0
375,411 + +0.4
375,411 + +1.0
375,611 - GFF696 0.23 +0.1
375,619 + GFF696 0.24 -0.9
375,619 + GFF696 0.24 -0.3
375,619 + GFF696 0.24 -0.5
375,619 + GFF696 0.24 -0.2
375,619 + GFF696 0.24 -0.4
375,619 + GFF696 0.24 -0.2
375,619 + GFF696 0.24 -0.7
375,619 + GFF696 0.24 -0.3
375,620 - GFF696 0.24 +0.8
375,622 + GFF696 0.24 -2.7
375,622 + GFF696 0.24 -1.2
375,622 + GFF696 0.24 -0.8
375,622 + GFF696 0.24 -1.7
375,622 + GFF696 0.24 -0.3
375,622 + GFF696 0.24 -0.4
375,623 - GFF696 0.24 +0.6
375,623 - GFF696 0.24 +0.7
375,623 - GFF696 0.24 -0.2
375,652 + GFF696 0.29 -0.9
375,652 + GFF696 0.29 -0.8
375,652 + GFF696 0.29 -0.2
375,652 + GFF696 0.29 -0.5
375,653 - GFF696 0.29 +0.1
375,805 + GFF696 0.51 +0.4
375,805 + GFF696 0.51 +1.6
375,806 - GFF696 0.51 -0.7
376,003 + GFF696 0.80 +0.6
376,003 + GFF696 0.80 +0.1
376,003 + GFF696 0.80 -0.9
376,003 + GFF696 0.80 -0.9
376,003 + GFF696 0.80 -1.0
376,003 + GFF696 0.80 -1.3
376,003 + GFF696 0.80 -1.0
376,004 - GFF696 0.80 -1.4
376,004 - GFF696 0.80 -1.0
376,157 + -2.4
376,157 + -0.2
376,157 + -1.7
376,594 - GFF697 0.39 -0.8
376,594 - GFF697 0.39 -1.1
376,721 + GFF697 0.50 +0.0
376,847 + GFF697 0.61 -0.9
376,847 + GFF697 0.61 -0.4
376,847 + GFF697 0.61 -1.1
376,848 - GFF697 0.61 +0.8
376,848 - GFF697 0.61 -0.4
376,848 - GFF697 0.61 -1.5
376,997 + GFF697 0.74 +0.8
376,997 + GFF697 0.74 -1.1
376,998 - GFF697 0.74 -0.3
377,018 + GFF697 0.76 -0.6
377,018 + GFF697 0.76 -1.0
377,019 - GFF697 0.76 -0.3
377,654 - GFF698 0.39 -0.4
377,707 + GFF698 0.45 -1.4
377,708 - GFF698 0.45 +0.0
377,719 + GFF698 0.46 +0.2
377,720 - GFF698 0.46 +1.2
377,896 + GFF698 0.66 +0.6
377,912 - GFF698 0.68 -0.5
377,984 - GFF698 0.76 -0.9
378,088 + GFF698 0.87 -0.1
378,196 + -0.4
378,196 + -0.2
378,196 + -0.6
378,196 + +0.6
378,196 + -0.1
378,197 - +0.1

Or see this region's nucleotide sequence