Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF695

Experiment: Ying_OrganicAcid7 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF693 and GFF694 are separated by 88 nucleotidesGFF694 and GFF695 are separated by 39 nucleotidesGFF695 and GFF696 overlap by 20 nucleotidesGFF696 and GFF697 are separated by 1 nucleotides GFF693 - Cytochrome c oxidase polypeptide III (EC 1.9.3.1), at 373,493 to 374,374 GFF693 GFF694 - hypothetical protein, at 374,463 to 374,696 GFF694 GFF695 - Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion, at 374,736 to 375,476 GFF695 GFF696 - Probable transmembrane protein, at 375,457 to 376,137 GFF696 GFF697 - Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA, at 376,139 to 377,302 GFF697 Position (kb) 374 375 376Strain fitness (log2 ratio) -2 -1 0 1 2at 374.123 kb on + strand, within GFF693at 374.123 kb on + strand, within GFF693at 374.136 kb on - strand, within GFF693at 374.136 kb on - strand, within GFF693at 374.315 kb on + strandat 374.316 kb on - strandat 374.351 kb on + strandat 374.352 kb on - strandat 374.352 kb on - strandat 374.352 kb on - strandat 374.352 kb on - strandat 374.363 kb on + strandat 374.363 kb on + strandat 374.364 kb on - strandat 374.364 kb on - strandat 374.373 kb on - strandat 374.464 kb on + strandat 374.509 kb on + strand, within GFF694at 374.509 kb on + strand, within GFF694at 374.632 kb on + strand, within GFF694at 374.632 kb on + strand, within GFF694at 374.632 kb on + strand, within GFF694at 374.632 kb on + strand, within GFF694at 374.632 kb on + strand, within GFF694at 374.633 kb on - strand, within GFF694at 374.633 kb on - strand, within GFF694at 374.633 kb on - strand, within GFF694at 374.633 kb on - strand, within GFF694at 374.689 kb on + strandat 374.689 kb on + strandat 374.689 kb on + strandat 374.690 kb on - strandat 374.690 kb on - strandat 374.690 kb on - strandat 375.187 kb on + strand, within GFF695at 375.187 kb on + strand, within GFF695at 375.187 kb on + strand, within GFF695at 375.187 kb on + strand, within GFF695at 375.188 kb on - strand, within GFF695at 375.188 kb on - strand, within GFF695at 375.188 kb on - strand, within GFF695at 375.188 kb on - strand, within GFF695at 375.188 kb on - strand, within GFF695at 375.188 kb on - strand, within GFF695at 375.190 kb on - strand, within GFF695at 375.230 kb on + strand, within GFF695at 375.230 kb on + strand, within GFF695at 375.366 kb on + strand, within GFF695at 375.366 kb on + strand, within GFF695at 375.411 kb on + strandat 375.411 kb on + strandat 375.411 kb on + strandat 375.411 kb on + strandat 375.611 kb on - strand, within GFF696at 375.619 kb on + strand, within GFF696at 375.619 kb on + strand, within GFF696at 375.619 kb on + strand, within GFF696at 375.619 kb on + strand, within GFF696at 375.619 kb on + strand, within GFF696at 375.619 kb on + strand, within GFF696at 375.619 kb on + strand, within GFF696at 375.619 kb on + strand, within GFF696at 375.620 kb on - strand, within GFF696at 375.622 kb on + strand, within GFF696at 375.622 kb on + strand, within GFF696at 375.622 kb on + strand, within GFF696at 375.622 kb on + strand, within GFF696at 375.622 kb on + strand, within GFF696at 375.622 kb on + strand, within GFF696at 375.623 kb on - strand, within GFF696at 375.623 kb on - strand, within GFF696at 375.623 kb on - strand, within GFF696at 375.652 kb on + strand, within GFF696at 375.652 kb on + strand, within GFF696at 375.652 kb on + strand, within GFF696at 375.652 kb on + strand, within GFF696at 375.653 kb on - strand, within GFF696at 375.805 kb on + strand, within GFF696at 375.805 kb on + strand, within GFF696at 375.806 kb on - strand, within GFF696at 376.003 kb on + strand, within GFF696at 376.003 kb on + strand, within GFF696at 376.003 kb on + strand, within GFF696at 376.003 kb on + strand, within GFF696at 376.003 kb on + strand, within GFF696at 376.003 kb on + strand, within GFF696at 376.003 kb on + strand, within GFF696at 376.004 kb on - strand, within GFF696at 376.004 kb on - strand, within GFF696at 376.157 kb on + strandat 376.157 kb on + strandat 376.157 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 1
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374,123 + GFF693 0.71 +1.6
374,123 + GFF693 0.71 +0.4
374,136 - GFF693 0.73 -0.4
374,136 - GFF693 0.73 +0.0
374,315 + +0.6
374,316 - -1.6
374,351 + -0.1
374,352 - +0.0
374,352 - +0.1
374,352 - +0.1
374,352 - -0.1
374,363 + -0.6
374,363 + +0.2
374,364 - +0.1
374,364 - +1.0
374,373 - +0.0
374,464 + -0.4
374,509 + GFF694 0.20 -0.0
374,509 + GFF694 0.20 +0.3
374,632 + GFF694 0.72 -0.3
374,632 + GFF694 0.72 -0.2
374,632 + GFF694 0.72 -0.1
374,632 + GFF694 0.72 -0.4
374,632 + GFF694 0.72 +0.9
374,633 - GFF694 0.73 -0.5
374,633 - GFF694 0.73 +1.6
374,633 - GFF694 0.73 +0.6
374,633 - GFF694 0.73 +0.2
374,689 + -0.8
374,689 + -0.1
374,689 + +1.1
374,690 - -0.0
374,690 - -0.2
374,690 - +0.2
375,187 + GFF695 0.61 -0.4
375,187 + GFF695 0.61 -1.0
375,187 + GFF695 0.61 -1.4
375,187 + GFF695 0.61 -1.2
375,188 - GFF695 0.61 -0.4
375,188 - GFF695 0.61 +0.6
375,188 - GFF695 0.61 -0.2
375,188 - GFF695 0.61 -1.3
375,188 - GFF695 0.61 -0.2
375,188 - GFF695 0.61 -0.5
375,190 - GFF695 0.61 +0.8
375,230 + GFF695 0.67 -1.1
375,230 + GFF695 0.67 -1.2
375,366 + GFF695 0.85 -0.4
375,366 + GFF695 0.85 -0.3
375,411 + +2.2
375,411 + -1.0
375,411 + +0.4
375,411 + +1.0
375,611 - GFF696 0.23 +0.1
375,619 + GFF696 0.24 -0.9
375,619 + GFF696 0.24 -0.3
375,619 + GFF696 0.24 -0.5
375,619 + GFF696 0.24 -0.2
375,619 + GFF696 0.24 -0.4
375,619 + GFF696 0.24 -0.2
375,619 + GFF696 0.24 -0.7
375,619 + GFF696 0.24 -0.3
375,620 - GFF696 0.24 +0.8
375,622 + GFF696 0.24 -2.7
375,622 + GFF696 0.24 -1.2
375,622 + GFF696 0.24 -0.8
375,622 + GFF696 0.24 -1.7
375,622 + GFF696 0.24 -0.3
375,622 + GFF696 0.24 -0.4
375,623 - GFF696 0.24 +0.6
375,623 - GFF696 0.24 +0.7
375,623 - GFF696 0.24 -0.2
375,652 + GFF696 0.29 -0.9
375,652 + GFF696 0.29 -0.8
375,652 + GFF696 0.29 -0.2
375,652 + GFF696 0.29 -0.5
375,653 - GFF696 0.29 +0.1
375,805 + GFF696 0.51 +0.4
375,805 + GFF696 0.51 +1.6
375,806 - GFF696 0.51 -0.7
376,003 + GFF696 0.80 +0.6
376,003 + GFF696 0.80 +0.1
376,003 + GFF696 0.80 -0.9
376,003 + GFF696 0.80 -0.9
376,003 + GFF696 0.80 -1.0
376,003 + GFF696 0.80 -1.3
376,003 + GFF696 0.80 -1.0
376,004 - GFF696 0.80 -1.4
376,004 - GFF696 0.80 -1.0
376,157 + -2.4
376,157 + -0.2
376,157 + -1.7

Or see this region's nucleotide sequence