Experiment: Ying_OrganicAcid7 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF648 and GFF649 overlap by 4 nucleotides GFF649 and GFF650 overlap by 4 nucleotides GFF650 and GFF651 are separated by 2 nucleotides GFF651 and GFF652 are separated by 4 nucleotides
GFF648 - UPF0301 protein YqgE, at 330,241 to 330,828
GFF648
GFF649 - Putative Holliday junction resolvase YggF, at 330,825 to 331,253
GFF649
GFF650 - Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR, at 331,250 to 331,774
GFF650
GFF651 - Aspartate carbamoyltransferase (EC 2.1.3.2), at 331,777 to 332,736
GFF651
GFF652 - Dihydroorotase (EC 3.5.2.3), at 332,741 to 334,066
GFF652
Position (kb) 331
332
333 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 331.550 kb on + strand, within GFF650 at 331.550 kb on + strand, within GFF650 at 331.550 kb on + strand, within GFF650 at 331.551 kb on - strand, within GFF650 at 331.595 kb on + strand, within GFF650 at 332.150 kb on - strand, within GFF651 at 332.242 kb on + strand, within GFF651 at 332.242 kb on + strand, within GFF651 at 332.242 kb on + strand, within GFF651 at 332.242 kb on + strand, within GFF651 at 332.242 kb on + strand, within GFF651 at 332.242 kb on + strand, within GFF651 at 332.242 kb on + strand, within GFF651 at 332.243 kb on - strand, within GFF651 at 332.243 kb on - strand, within GFF651 at 332.258 kb on - strand, within GFF651 at 332.530 kb on + strand, within GFF651 at 332.530 kb on + strand, within GFF651 at 332.530 kb on + strand, within GFF651 at 332.531 kb on - strand, within GFF651 at 332.680 kb on + strand at 332.680 kb on + strand at 332.681 kb on - strand at 332.734 kb on + strand at 332.734 kb on + strand at 332.735 kb on - strand at 333.246 kb on - strand, within GFF652 at 333.566 kb on + strand, within GFF652 at 333.566 kb on + strand, within GFF652 at 333.567 kb on - strand, within GFF652 at 333.567 kb on - strand, within GFF652
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 1 remove 331,550 + GFF650 0.57 -0.7 331,550 + GFF650 0.57 -0.0 331,550 + GFF650 0.57 -0.7 331,551 - GFF650 0.57 -0.2 331,595 + GFF650 0.66 -1.5 332,150 - GFF651 0.39 -1.9 332,242 + GFF651 0.48 -1.2 332,242 + GFF651 0.48 -2.1 332,242 + GFF651 0.48 -0.7 332,242 + GFF651 0.48 -1.7 332,242 + GFF651 0.48 -1.2 332,242 + GFF651 0.48 -2.8 332,242 + GFF651 0.48 -1.4 332,243 - GFF651 0.49 -3.7 332,243 - GFF651 0.49 -1.7 332,258 - GFF651 0.50 -1.7 332,530 + GFF651 0.78 -2.7 332,530 + GFF651 0.78 -2.5 332,530 + GFF651 0.78 -1.9 332,531 - GFF651 0.79 -1.2 332,680 + -1.7 332,680 + -2.4 332,681 - -1.7 332,734 + +2.2 332,734 + -0.3 332,735 - +0.4 333,246 - GFF652 0.38 -2.4 333,566 + GFF652 0.62 -2.0 333,566 + GFF652 0.62 -2.6 333,567 - GFF652 0.62 -1.5 333,567 - GFF652 0.62 -2.1
Or see this region's nucleotide sequence