Experiment: Ying_OrganicAcid7 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF544 and GFF545 overlap by 6 nucleotides GFF545 and GFF546 are separated by 24 nucleotides GFF546 and GFF547 are separated by 16 nucleotides
GFF544 - hypothetical protein, at 213,237 to 213,419
GFF544
GFF545 - Diaminopimelate epimerase (EC 5.1.1.7), at 213,414 to 214,289
GFF545
GFF546 - Protein of unknown function DUF484, at 214,314 to 214,997
GFF546
GFF547 - Tyrosine recombinase XerC, at 215,014 to 216,045
GFF547
Position (kb) 214
215 Strain fitness (log2 ratio) -2
-1
0
1 at 213.323 kb on + strand, within GFF544 at 213.324 kb on - strand, within GFF544 at 214.362 kb on + strand at 214.362 kb on + strand at 214.363 kb on - strand at 214.363 kb on - strand at 214.695 kb on + strand, within GFF546 at 214.695 kb on + strand, within GFF546 at 214.695 kb on + strand, within GFF546 at 214.695 kb on + strand, within GFF546 at 214.695 kb on + strand, within GFF546 at 214.696 kb on - strand, within GFF546 at 214.696 kb on - strand, within GFF546 at 214.696 kb on - strand, within GFF546 at 214.696 kb on - strand, within GFF546 at 215.086 kb on + strand at 215.140 kb on + strand, within GFF547 at 215.140 kb on + strand, within GFF547 at 215.141 kb on - strand, within GFF547 at 215.302 kb on + strand, within GFF547 at 215.303 kb on - strand, within GFF547 at 215.488 kb on + strand, within GFF547 at 215.906 kb on - strand, within GFF547 at 215.941 kb on + strand, within GFF547 at 215.942 kb on - strand at 215.942 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 1 remove 213,323 + GFF544 0.47 -1.8 213,324 - GFF544 0.48 -0.6 214,362 + +0.0 214,362 + -0.5 214,363 - -0.9 214,363 - -0.5 214,695 + GFF546 0.56 +0.4 214,695 + GFF546 0.56 -2.4 214,695 + GFF546 0.56 -0.5 214,695 + GFF546 0.56 -0.8 214,695 + GFF546 0.56 +0.3 214,696 - GFF546 0.56 -0.6 214,696 - GFF546 0.56 -0.9 214,696 - GFF546 0.56 -1.0 214,696 - GFF546 0.56 -0.3 215,086 + +0.7 215,140 + GFF547 0.12 -1.5 215,140 + GFF547 0.12 +0.0 215,141 - GFF547 0.12 +0.3 215,302 + GFF547 0.28 -0.4 215,303 - GFF547 0.28 -0.2 215,488 + GFF547 0.46 -1.3 215,906 - GFF547 0.86 -0.4 215,941 + GFF547 0.90 -1.4 215,942 - -1.0 215,942 - +0.1
Or see this region's nucleotide sequence