Experiment: Ying_OrganicAcid7 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF519 and GFF520 are separated by 113 nucleotides GFF520 and GFF521 are separated by 1 nucleotides GFF521 and GFF522 are separated by 24 nucleotides GFF522 and GFF523 are separated by 136 nucleotides
GFF519 - Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4), at 187,121 to 188,020
GFF519
GFF520 - Glutamate Aspartate transport system permease protein GltJ (TC 3.A.1.3.4), at 188,134 to 188,889
GFF520
GFF521 - Glutamate Aspartate transport system permease protein GltK (TC 3.A.1.3.4), at 188,891 to 189,562
GFF521
GFF522 - Glutamate Aspartate transport ATP-binding protein GltL (TC 3.A.1.3.4), at 189,587 to 190,324
GFF522
GFF523 - Dihydroorotase (EC 3.5.2.3), at 190,461 to 191,507
GFF523
Position (kb) 188
189
190 Strain fitness (log2 ratio) -2
-1
0
1
2 at 188.007 kb on - strand at 188.007 kb on - strand at 188.007 kb on - strand at 188.018 kb on + strand at 188.018 kb on + strand at 188.133 kb on + strand at 188.222 kb on - strand, within GFF520 at 188.222 kb on - strand, within GFF520 at 188.222 kb on - strand, within GFF520 at 188.222 kb on - strand, within GFF520 at 188.222 kb on - strand, within GFF520 at 188.313 kb on + strand, within GFF520 at 188.561 kb on - strand, within GFF520 at 188.597 kb on - strand, within GFF520 at 188.599 kb on + strand, within GFF520 at 188.600 kb on - strand, within GFF520 at 188.768 kb on - strand, within GFF520 at 188.768 kb on - strand, within GFF520 at 188.789 kb on - strand, within GFF520 at 188.849 kb on + strand at 188.919 kb on - strand at 189.075 kb on - strand, within GFF521 at 189.075 kb on - strand, within GFF521 at 189.290 kb on + strand, within GFF521 at 189.291 kb on - strand, within GFF521 at 189.395 kb on + strand, within GFF521 at 189.506 kb on + strand at 189.506 kb on + strand at 189.506 kb on + strand at 189.507 kb on - strand at 189.507 kb on - strand at 189.555 kb on + strand at 190.322 kb on + strand at 190.322 kb on + strand at 190.481 kb on + strand at 190.481 kb on + strand at 190.481 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 1 remove 188,007 - +0.8 188,007 - -0.1 188,007 - -0.4 188,018 + -2.4 188,018 + +0.1 188,133 + -0.0 188,222 - GFF520 0.12 +0.7 188,222 - GFF520 0.12 +0.6 188,222 - GFF520 0.12 -0.7 188,222 - GFF520 0.12 +0.1 188,222 - GFF520 0.12 -0.6 188,313 + GFF520 0.24 +0.2 188,561 - GFF520 0.56 -0.6 188,597 - GFF520 0.61 -0.7 188,599 + GFF520 0.62 +0.0 188,600 - GFF520 0.62 -0.1 188,768 - GFF520 0.84 -0.1 188,768 - GFF520 0.84 -0.1 188,789 - GFF520 0.87 +0.1 188,849 + +0.7 188,919 - -0.2 189,075 - GFF521 0.27 -0.3 189,075 - GFF521 0.27 -1.2 189,290 + GFF521 0.59 -0.1 189,291 - GFF521 0.60 +1.0 189,395 + GFF521 0.75 -0.7 189,506 + -0.2 189,506 + -0.6 189,506 + -0.1 189,507 - -0.9 189,507 - +1.4 189,555 + +0.7 190,322 + +0.2 190,322 + +1.8 190,481 + -1.5 190,481 + -1.0 190,481 + -1.6
Or see this region's nucleotide sequence