Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4700

Experiment: Ying_OrganicAcid7 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 1
1,651,737	+				+0.3
1,652,577	+		GFF4700	0.56	-0.8
1,652,578	-		GFF4700	0.56	-0.6
1,653,138	+				-0.2
1,653,138	+				+0.2
1,653,138	+				-0.1
1,653,138	+				+0.6
1,653,138	+				+0.4
1,653,139	-				+1.0
1,653,139	-				+0.1
1,653,139	-				-0.3
1,653,163	+				-0.8
1,653,163	+				-0.6
1,653,168	+				+0.4
1,653,169	-				-0.1
1,653,418	+		GFF4701	0.14	+1.2
1,653,418	+		GFF4701	0.14	+0.1
1,653,418	+		GFF4701	0.14	+0.6
1,653,418	+		GFF4701	0.14	-0.4
1,653,419	-		GFF4701	0.14	-0.0
1,653,419	-		GFF4701	0.14	+0.2
1,653,419	-		GFF4701	0.14	-0.6
1,653,419	-		GFF4701	0.14	+0.5
1,653,419	-		GFF4701	0.14	+0.0
1,653,463	+		GFF4701	0.18	+0.3
1,653,463	+		GFF4701	0.18	-0.5
1,653,463	+		GFF4701	0.18	+0.4
1,653,463	+		GFF4701	0.18	-0.2
1,653,464	-		GFF4701	0.18	-0.2
1,653,464	-		GFF4701	0.18	+0.4
1,653,464	-		GFF4701	0.18	-0.5
1,653,464	-		GFF4701	0.18	-0.2
1,653,464	-		GFF4701	0.18	-1.3
1,653,464	-		GFF4701	0.18	+0.2
1,653,464	-		GFF4701	0.18	+0.0
1,653,464	-		GFF4701	0.18	-0.6
1,653,464	-		GFF4701	0.18	-1.1
1,653,464	-		GFF4701	0.18	+0.5
1,653,640	+		GFF4701	0.32	+1.0
1,653,641	-		GFF4701	0.32	+0.1
1,653,641	-		GFF4701	0.32	+1.3
1,653,641	-		GFF4701	0.32	+0.0
1,653,641	-		GFF4701	0.32	-0.3
1,653,641	-		GFF4701	0.32	+0.2
1,653,641	-		GFF4701	0.32	-0.4
1,653,753	+		GFF4701	0.41	-1.1
1,653,827	-		GFF4701	0.47	-0.2
1,653,925	+		GFF4701	0.55	-0.0
1,653,925	+		GFF4701	0.55	-0.1
1,653,926	-		GFF4701	0.55	+0.1
1,653,926	-		GFF4701	0.55	+0.2
1,653,926	-		GFF4701	0.55	-0.1
1,654,090	+		GFF4701	0.68	-0.7
1,654,090	+		GFF4701	0.68	-0.3