Experiment: Ying_OrganicAcid7 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4553 and GFF4554 are separated by 150 nucleotides GFF4554 and GFF4555 are separated by 14 nucleotides
GFF4553 - N-succinyl-L,L-diaminopimelate aminotransferase alternative (EC 2.6.1.17), at 1,485,036 to 1,486,259
GFF4553
GFF4554 - Chromosome partition protein smc, at 1,486,410 to 1,489,928
GFF4554
GFF4555 - Cell division protein, at 1,489,943 to 1,491,079
GFF4555
Position (kb) 1486
1487
1488
1489
1490 Strain fitness (log2 ratio) -1
0
1
2 at 1485.445 kb on + strand, within GFF4553 at 1485.446 kb on - strand, within GFF4553 at 1485.446 kb on - strand, within GFF4553 at 1485.446 kb on - strand, within GFF4553 at 1485.446 kb on - strand, within GFF4553 at 1485.454 kb on + strand, within GFF4553 at 1485.625 kb on + strand, within GFF4553 at 1485.625 kb on + strand, within GFF4553 at 1485.626 kb on - strand, within GFF4553 at 1485.626 kb on - strand, within GFF4553 at 1485.637 kb on + strand, within GFF4553 at 1485.637 kb on + strand, within GFF4553 at 1485.637 kb on + strand, within GFF4553 at 1485.637 kb on + strand, within GFF4553 at 1485.638 kb on - strand, within GFF4553 at 1485.638 kb on - strand, within GFF4553 at 1485.832 kb on + strand, within GFF4553 at 1485.832 kb on + strand, within GFF4553 at 1485.832 kb on + strand, within GFF4553 at 1485.832 kb on + strand, within GFF4553 at 1485.832 kb on + strand, within GFF4553 at 1485.833 kb on - strand, within GFF4553 at 1485.833 kb on - strand, within GFF4553 at 1485.833 kb on - strand, within GFF4553 at 1485.833 kb on - strand, within GFF4553 at 1485.833 kb on - strand, within GFF4553 at 1485.833 kb on - strand, within GFF4553 at 1485.834 kb on - strand, within GFF4553 at 1485.834 kb on - strand, within GFF4553 at 1485.835 kb on + strand, within GFF4553 at 1485.836 kb on - strand, within GFF4553 at 1485.836 kb on - strand, within GFF4553 at 1485.836 kb on - strand, within GFF4553 at 1485.836 kb on - strand, within GFF4553 at 1485.836 kb on - strand, within GFF4553 at 1485.836 kb on - strand, within GFF4553 at 1485.836 kb on - strand, within GFF4553 at 1485.871 kb on + strand, within GFF4553 at 1485.871 kb on + strand, within GFF4553 at 1485.871 kb on + strand, within GFF4553 at 1485.871 kb on + strand, within GFF4553 at 1485.871 kb on + strand, within GFF4553 at 1485.872 kb on - strand, within GFF4553 at 1485.872 kb on - strand, within GFF4553 at 1485.872 kb on - strand, within GFF4553 at 1485.872 kb on - strand, within GFF4553 at 1485.872 kb on - strand, within GFF4553 at 1486.012 kb on + strand, within GFF4553 at 1486.013 kb on - strand, within GFF4553 at 1486.075 kb on + strand, within GFF4553 at 1486.075 kb on + strand, within GFF4553 at 1486.075 kb on + strand, within GFF4553 at 1486.324 kb on + strand at 1486.325 kb on - strand at 1486.381 kb on + strand at 1490.102 kb on + strand, within GFF4555 at 1490.679 kb on - strand, within GFF4555
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 1 remove 1,485,445 + GFF4553 0.33 -0.3 1,485,446 - GFF4553 0.33 -0.5 1,485,446 - GFF4553 0.33 -0.6 1,485,446 - GFF4553 0.33 -0.8 1,485,446 - GFF4553 0.33 +0.1 1,485,454 + GFF4553 0.34 -0.4 1,485,625 + GFF4553 0.48 +0.2 1,485,625 + GFF4553 0.48 +2.0 1,485,626 - GFF4553 0.48 +0.8 1,485,626 - GFF4553 0.48 -0.6 1,485,637 + GFF4553 0.49 -0.1 1,485,637 + GFF4553 0.49 -0.3 1,485,637 + GFF4553 0.49 +1.4 1,485,637 + GFF4553 0.49 +0.4 1,485,638 - GFF4553 0.49 +0.1 1,485,638 - GFF4553 0.49 -0.2 1,485,832 + GFF4553 0.65 +0.3 1,485,832 + GFF4553 0.65 -0.7 1,485,832 + GFF4553 0.65 -0.5 1,485,832 + GFF4553 0.65 -0.4 1,485,832 + GFF4553 0.65 +0.3 1,485,833 - GFF4553 0.65 +1.0 1,485,833 - GFF4553 0.65 -0.9 1,485,833 - GFF4553 0.65 +0.1 1,485,833 - GFF4553 0.65 +0.3 1,485,833 - GFF4553 0.65 +0.3 1,485,833 - GFF4553 0.65 -0.3 1,485,834 - GFF4553 0.65 -0.6 1,485,834 - GFF4553 0.65 -0.4 1,485,835 + GFF4553 0.65 -0.2 1,485,836 - GFF4553 0.65 -0.2 1,485,836 - GFF4553 0.65 -0.3 1,485,836 - GFF4553 0.65 +0.6 1,485,836 - GFF4553 0.65 +0.3 1,485,836 - GFF4553 0.65 -0.2 1,485,836 - GFF4553 0.65 +1.0 1,485,836 - GFF4553 0.65 -0.4 1,485,871 + GFF4553 0.68 -0.1 1,485,871 + GFF4553 0.68 -0.4 1,485,871 + GFF4553 0.68 +0.3 1,485,871 + GFF4553 0.68 -0.1 1,485,871 + GFF4553 0.68 -0.1 1,485,872 - GFF4553 0.68 -0.1 1,485,872 - GFF4553 0.68 +0.5 1,485,872 - GFF4553 0.68 -0.2 1,485,872 - GFF4553 0.68 -0.6 1,485,872 - GFF4553 0.68 -0.4 1,486,012 + GFF4553 0.80 +0.3 1,486,013 - GFF4553 0.80 -0.5 1,486,075 + GFF4553 0.85 -0.6 1,486,075 + GFF4553 0.85 -0.0 1,486,075 + GFF4553 0.85 +0.1 1,486,324 + -0.6 1,486,325 - +1.0 1,486,381 + -0.3 1,490,102 + GFF4555 0.14 -0.4 1,490,679 - GFF4555 0.65 -1.2
Or see this region's nucleotide sequence