Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4536

Experiment: Ying_OrganicAcid7 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 1
1,461,860	+		GFF4534	0.75	-0.7
1,462,035	-		GFF4534	0.90	-1.4
1,462,035	-		GFF4534	0.90	-1.2
1,462,195	-				-0.3
1,462,501	+		GFF4535	0.46	-1.9
1,462,502	-		GFF4535	0.47	-2.2
1,462,510	+		GFF4535	0.48	-1.0
1,462,511	-		GFF4535	0.48	-2.2
1,462,567	+		GFF4535	0.58	-1.8
1,462,636	+		GFF4535	0.70	-1.0
1,462,636	+		GFF4535	0.70	-3.0
1,462,637	-		GFF4535	0.70	-1.2
1,462,804	+				-0.8
1,462,804	+				-2.2
1,462,804	+				-1.6
1,462,804	+				-1.8
1,462,805	-				-0.8
1,462,805	-				-1.6
1,462,805	-				-2.9
1,462,805	-				-1.4
1,462,805	-				-1.1
1,462,805	-				-0.9
1,462,807	-				-1.5
1,463,301	+		GFF4536	0.62	-1.1
1,463,301	+		GFF4536	0.62	-0.2
1,463,301	+		GFF4536	0.62	-0.3
1,463,302	-		GFF4536	0.62	-1.2
1,463,322	+		GFF4536	0.65	-1.0
1,463,355	+		GFF4536	0.69	-0.8
1,463,377	-		GFF4536	0.72	-1.6
1,463,391	+		GFF4536	0.73	-0.8
1,463,598	+				+0.5
1,463,598	+				+1.6
1,463,599	-				-0.4
1,463,667	+				-0.5
1,463,667	+				+1.6
1,463,667	+				-0.4
1,463,667	+				+0.0
1,463,667	+				-0.5
1,463,667	-				-0.4
1,463,668	-				-0.9
1,463,668	-				+0.8
1,463,668	-				-0.2
1,463,668	-				+0.3
1,463,668	-				-0.0
1,463,668	-				-0.2
1,463,668	-				-0.3
1,463,875	+		GFF4537	0.18	-0.4
1,463,875	+		GFF4537	0.18	-0.1
1,463,875	+		GFF4537	0.18	-0.4
1,463,875	+		GFF4537	0.18	-0.1
1,463,876	-		GFF4537	0.18	+0.4
1,463,876	-		GFF4537	0.18	+0.1
1,463,876	-		GFF4537	0.18	-0.7
1,463,914	+		GFF4537	0.22	+0.2
1,463,920	+		GFF4537	0.22	-0.1
1,463,920	+		GFF4537	0.22	-0.1
1,463,920	+		GFF4537	0.22	+0.6
1,463,920	+		GFF4537	0.22	-0.0
1,463,920	+		GFF4537	0.22	+0.3
1,463,921	-		GFF4537	0.22	-0.9
1,463,921	-		GFF4537	0.22	-1.0
1,463,921	-		GFF4537	0.22	-0.9
1,463,921	-		GFF4537	0.22	-0.8
1,463,921	-		GFF4537	0.22	-0.9
1,463,921	-		GFF4537	0.22	+0.3
1,463,921	-		GFF4537	0.22	+0.2
1,463,921	-		GFF4537	0.22	+0.5
1,463,921	-		GFF4537	0.22	-1.2
1,463,921	-		GFF4537	0.22	-0.4
1,463,921	-		GFF4537	0.22	-0.0
1,464,210	+		GFF4537	0.48	+0.9
1,464,210	+		GFF4537	0.48	-0.4
1,464,397	+		GFF4537	0.65	+0.6
1,464,397	+		GFF4537	0.65	+0.8
1,464,398	-		GFF4537	0.65	-0.1
1,464,398	-		GFF4537	0.65	+0.0
1,464,398	-		GFF4537	0.65	-0.5
1,464,454	+		GFF4537	0.70	+0.8
1,464,454	+		GFF4537	0.70	+0.2
1,464,455	-		GFF4537	0.70	+0.3
1,464,455	-		GFF4537	0.70	-0.1
1,464,455	-		GFF4537	0.70	-0.1