Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4326

Experiment: Ying_OrganicAcid7 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 1
1,254,712	-		GFF4325	0.70	+0.8
1,254,793	-		GFF4325	0.76	-0.1
1,255,017	-				-0.3
1,255,243	+				-0.2
1,255,244	-				+0.1
1,255,244	-				+0.2
1,255,244	-				-0.8
1,255,505	-		GFF4326	0.30	+0.9
1,255,505	-		GFF4326	0.30	-0.1
1,255,505	-		GFF4326	0.30	-1.5
1,255,505	-		GFF4326	0.30	+2.0
1,255,573	+		GFF4326	0.36	-1.0
1,255,963	+		GFF4326	0.69	-0.1
1,256,146	+		GFF4326	0.84	-1.9
1,256,146	+		GFF4326	0.84	-0.5
1,256,147	-		GFF4326	0.84	-0.3
1,256,147	-		GFF4326	0.84	+0.1
1,256,147	-		GFF4326	0.84	-0.2
1,256,147	-		GFF4326	0.84	-2.0
1,256,147	-		GFF4326	0.84	-0.1
1,256,308	+				+0.2
1,256,309	-				+0.4
1,256,565	+		GFF4327	0.47	-0.4
1,256,566	-		GFF4327	0.47	+0.1
1,256,970	+				-0.6
1,256,971	-				-0.5
1,256,971	-				+0.9
1,256,971	-				-0.1
1,256,971	-				+0.5
1,256,971	-				-1.6
1,256,990	+				+0.1
1,256,991	-				-0.0
1,257,185	+				-0.5
1,257,185	+				+0.5
1,257,185	+				-0.1
1,257,185	+				-0.2
1,257,185	+				-1.1
1,257,185	+				+0.6
1,257,186	-				-0.1
1,257,186	-				-0.3
1,257,186	-				+0.4
1,257,186	-				+0.0
1,257,186	-				-0.4