Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4230

Experiment: Ying_OrganicAcid7 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 1
1,143,183	-		GFF4229	0.66	-1.1
1,143,183	-		GFF4229	0.66	+0.8
1,143,336	-		GFF4229	0.76	-0.6
1,143,593	+				-1.2
1,143,594	-				+0.6
1,143,849	+				-1.6
1,143,849	+				-0.6
1,143,849	+				-0.8
1,143,849	+				+0.9
1,143,849	+				+0.1
1,143,849	+				+1.0
1,143,850	-				+1.0
1,143,850	-				+0.2
1,143,850	-				-0.6
1,143,850	-				-0.1
1,143,850	-				-0.3
1,143,850	-				+0.4
1,143,860	+				+0.1
1,143,860	+				-0.6
1,143,861	-				+0.1
1,143,875	+				+0.0
1,143,876	-				-0.0
1,143,892	+				+0.1
1,144,016	+		GFF4230	0.11	-0.7
1,144,025	+		GFF4230	0.12	-1.4
1,144,025	+		GFF4230	0.12	-0.1
1,144,026	-		GFF4230	0.12	+0.3
1,144,046	+		GFF4230	0.14	-0.3
1,144,046	+		GFF4230	0.14	-0.5
1,144,046	+		GFF4230	0.14	+0.2
1,144,046	+		GFF4230	0.14	+0.1
1,144,046	+		GFF4230	0.14	-0.7
1,144,047	-		GFF4230	0.14	-0.1
1,144,047	-		GFF4230	0.14	+0.1
1,144,047	-		GFF4230	0.14	+0.5
1,144,047	-		GFF4230	0.14	-0.1
1,144,076	+		GFF4230	0.17	-0.2
1,144,076	+		GFF4230	0.17	+1.6
1,144,077	-		GFF4230	0.17	+0.7
1,144,422	-		GFF4230	0.50	+0.6
1,144,422	-		GFF4230	0.50	-0.1
1,144,563	-		GFF4230	0.64	-0.1
1,144,563	-		GFF4230	0.64	-0.2
1,144,577	+		GFF4230	0.65	-0.1
1,144,578	-		GFF4230	0.65	+0.1
1,144,578	-		GFF4230	0.65	+0.6
1,144,578	-		GFF4230	0.65	+1.8
1,144,578	-		GFF4230	0.65	-0.2
1,144,631	+		GFF4230	0.70	+0.3
1,144,631	+		GFF4230	0.70	-0.1
1,144,631	+		GFF4230	0.70	+0.4
1,144,631	+		GFF4230	0.70	-0.9
1,144,631	+		GFF4230	0.70	-0.9
1,144,631	+		GFF4230	0.70	-0.5
1,144,631	+		GFF4230	0.70	+0.8
1,144,631	+		GFF4230	0.70	-0.3
1,144,632	-		GFF4230	0.70	+0.2
1,144,632	-		GFF4230	0.70	-0.1
1,144,632	-		GFF4230	0.70	-0.3
1,144,632	-		GFF4230	0.70	+0.3
1,144,632	-		GFF4230	0.70	+1.0
1,144,632	-		GFF4230	0.70	-0.7
1,144,632	-		GFF4230	0.70	+0.1
1,144,632	-		GFF4230	0.70	-0.6
1,144,632	-		GFF4230	0.70	+0.4
1,144,632	-		GFF4230	0.70	+0.0
1,144,772	+		GFF4230	0.84	-1.4
1,144,773	-		GFF4230	0.84	-0.1
1,144,773	-		GFF4230	0.84	+0.3
1,144,773	-		GFF4230	0.84	-0.0
1,144,773	-		GFF4230	0.84	-0.4
1,144,868	+				-1.0
1,144,868	+				+0.5
1,144,869	-				+1.0
1,144,934	+				+0.7
1,144,934	+				-2.1
1,144,934	+				+2.2
1,144,934	+				+0.1
1,144,934	+				-0.1
1,144,934	+				-1.6
1,144,934	+				-0.7
1,144,935	-				+0.2
1,144,935	-				-0.3
1,144,935	-				+0.2
1,144,935	-				-0.1
1,145,012	+				+0.2
1,145,012	+				-0.3
1,145,012	+				+1.3
1,145,012	+				-0.1
1,145,012	+				+0.0
1,145,013	-				+0.5
1,145,013	-				+0.1
1,145,013	-				+1.1
1,145,013	-				+0.1
1,145,013	-				-0.1
1,145,278	+		GFF4231	0.25	-0.8
1,145,451	+		GFF4231	0.43	-0.4
1,145,451	+		GFF4231	0.43	+0.0
1,145,451	+		GFF4231	0.43	+0.2
1,145,451	+		GFF4231	0.43	+0.1
1,145,452	-		GFF4231	0.43	+0.6
1,145,452	-		GFF4231	0.43	-0.9
1,145,452	-		GFF4231	0.43	+0.3
1,145,496	+		GFF4231	0.47	-0.6
1,145,497	-		GFF4231	0.47	+0.1
1,145,685	+		GFF4231	0.66	+0.7
1,145,686	-		GFF4231	0.66	-0.2