Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4228

Experiment: Ying_OrganicAcid7 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 1
1,140,887	+		GFF4226	0.86	+0.6
1,140,887	+		GFF4226	0.86	-1.6
1,140,887	+		GFF4226	0.86	-0.7
1,140,888	+		GFF4226	0.86	+0.0
1,140,888	-		GFF4226	0.86	-0.2
1,140,888	-		GFF4226	0.86	-0.1
1,140,888	-		GFF4226	0.86	-0.4
1,141,031	+				+0.3
1,141,031	+				-1.1
1,141,031	+				+0.3
1,141,032	-				-0.1
1,141,079	+				+0.3
1,141,079	+				-0.3
1,141,079	+				-0.3
1,141,079	+				-0.1
1,141,079	+				-0.5
1,141,079	+				-0.3
1,141,079	+				-0.4
1,141,079	+				-0.2
1,141,080	-				-0.0
1,141,080	-				-1.1
1,141,080	-				+0.2
1,141,080	-				-0.7
1,141,080	-				-0.6
1,141,080	-				-0.7
1,141,844	+		GFF4228	0.38	-1.1
1,141,844	+		GFF4228	0.38	-0.0
1,141,918	+		GFF4228	0.55	+0.2
1,141,919	-		GFF4228	0.56	+0.7
1,141,919	-		GFF4228	0.56	-0.1
1,141,919	-		GFF4228	0.56	-0.6
1,141,919	-		GFF4228	0.56	-0.5
1,142,148	+				-0.1
1,142,155	+				+0.0
1,142,156	-				-0.2
1,142,291	+				-0.5
1,142,342	+				-0.3
1,142,552	+		GFF4229	0.23	+0.3
1,142,636	+		GFF4229	0.29	-0.3
1,142,637	-		GFF4229	0.29	-0.4
1,142,801	+		GFF4229	0.40	-0.3
1,142,801	+		GFF4229	0.40	+0.6
1,142,801	+		GFF4229	0.40	-0.7
1,142,802	-		GFF4229	0.40	+0.2
1,142,802	-		GFF4229	0.40	+0.0