Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4138

Experiment: Ying_OrganicAcid7 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 1
1,048,372	+				+0.1
1,048,372	+				-1.2
1,048,372	+				-0.6
1,048,372	+				-1.2
1,048,373	-				-0.4
1,048,373	-				+0.1
1,048,373	-				-0.5
1,048,373	-				-0.6
1,048,403	-				+0.1
1,048,718	+		GFF4136	0.32	-0.4
1,048,718	+		GFF4136	0.32	-0.6
1,048,718	+		GFF4136	0.32	+0.3
1,048,718	+		GFF4136	0.32	-0.2
1,048,719	-		GFF4136	0.32	+1.6
1,048,719	-		GFF4136	0.32	+0.1
1,048,719	-		GFF4136	0.32	+0.5
1,048,719	-		GFF4136	0.32	+0.5
1,048,719	-		GFF4136	0.32	-0.3
1,048,736	+		GFF4136	0.35	+0.2
1,048,736	+		GFF4136	0.35	-0.4
1,048,737	-		GFF4136	0.35	+0.2
1,048,737	-		GFF4136	0.35	-0.7
1,048,737	-		GFF4136	0.35	+0.1
1,048,787	+		GFF4136	0.43	-1.4
1,048,788	-		GFF4136	0.43	+0.2
1,048,959	-		GFF4136	0.70	-0.5
1,049,038	+		GFF4136	0.83	-0.6
1,049,360	+				+0.1
1,049,360	+				-0.2
1,049,360	+				-0.3
1,049,361	-				+0.4
1,049,519	+		GFF4138	0.21	-0.4
1,049,585	+		GFF4138	0.28	-0.4
1,049,667	-		GFF4138	0.37	-0.9
1,050,200	+				+0.1
1,050,201	-				+0.1
1,050,453	+				-0.9
1,050,453	+				+0.2
1,050,523	-		GFF4139	0.13	-0.4
1,050,561	+		GFF4139	0.16	+0.0
1,050,561	+		GFF4139	0.16	+0.3
1,050,661	-		GFF4139	0.23	+0.1
1,050,960	+		GFF4139	0.45	+0.0
1,050,960	+		GFF4139	0.45	+0.3
1,050,960	+		GFF4139	0.45	+0.4
1,050,960	+		GFF4139	0.45	+0.0
1,050,960	+		GFF4139	0.45	-0.4
1,050,961	-		GFF4139	0.45	-0.1
1,050,961	-		GFF4139	0.45	+0.3
1,050,961	-		GFF4139	0.45	-0.4
1,050,961	-		GFF4139	0.45	-0.7
1,050,961	-		GFF4139	0.45	+0.2
1,051,023	+		GFF4139	0.49	-0.3
1,051,024	-		GFF4139	0.49	+0.6
1,051,227	+		GFF4139	0.64	-0.4