Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3812

Experiment: Ying_OrganicAcid7 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3811 and GFF3812 are separated by 162 nucleotidesGFF3812 and GFF3813 are separated by 10 nucleotides GFF3811 - COG0457: FOG: TPR repeat, at 714,244 to 715,563 GFF3811 GFF3812 - hypothetical protein, at 715,726 to 716,655 GFF3812 GFF3813 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 716,666 to 717,841 GFF3813 Position (kb) 715 716 717Strain fitness (log2 ratio) -2 -1 0 1at 714.726 kb on - strand, within GFF3811at 714.761 kb on + strand, within GFF3811at 714.761 kb on + strand, within GFF3811at 714.761 kb on + strand, within GFF3811at 714.761 kb on + strand, within GFF3811at 714.761 kb on + strand, within GFF3811at 714.762 kb on - strand, within GFF3811at 714.797 kb on + strand, within GFF3811at 714.836 kb on + strand, within GFF3811at 714.836 kb on + strand, within GFF3811at 714.837 kb on - strand, within GFF3811at 714.920 kb on + strand, within GFF3811at 714.920 kb on + strand, within GFF3811at 714.921 kb on - strand, within GFF3811at 714.921 kb on - strand, within GFF3811at 715.031 kb on + strand, within GFF3811at 715.031 kb on + strand, within GFF3811at 715.032 kb on - strand, within GFF3811at 715.032 kb on - strand, within GFF3811at 715.032 kb on - strand, within GFF3811at 715.307 kb on + strand, within GFF3811at 715.307 kb on + strand, within GFF3811at 715.308 kb on - strand, within GFF3811at 715.308 kb on - strand, within GFF3811at 715.325 kb on + strand, within GFF3811at 715.326 kb on - strand, within GFF3811at 715.326 kb on - strand, within GFF3811at 715.326 kb on - strand, within GFF3811at 715.326 kb on - strand, within GFF3811at 715.326 kb on - strand, within GFF3811at 715.409 kb on + strand, within GFF3811at 715.409 kb on + strand, within GFF3811at 715.409 kb on + strand, within GFF3811at 715.409 kb on + strand, within GFF3811at 715.409 kb on + strand, within GFF3811at 715.409 kb on + strand, within GFF3811at 715.410 kb on - strand, within GFF3811at 715.410 kb on - strand, within GFF3811at 715.410 kb on - strand, within GFF3811at 715.410 kb on - strand, within GFF3811at 715.410 kb on - strand, within GFF3811at 715.439 kb on + strandat 715.440 kb on - strandat 715.440 kb on - strandat 715.440 kb on - strandat 715.587 kb on + strandat 715.587 kb on + strandat 715.587 kb on + strandat 715.587 kb on + strandat 715.587 kb on + strandat 715.587 kb on + strandat 715.587 kb on + strandat 715.587 kb on + strandat 715.588 kb on - strandat 715.588 kb on - strandat 715.588 kb on - strandat 715.637 kb on + strandat 715.638 kb on - strandat 715.658 kb on + strandat 715.658 kb on + strandat 715.661 kb on + strandat 715.661 kb on + strandat 715.661 kb on + strandat 715.661 kb on + strandat 715.661 kb on + strandat 715.661 kb on + strandat 715.662 kb on - strandat 715.662 kb on - strandat 715.662 kb on - strandat 715.662 kb on - strandat 715.662 kb on - strandat 715.693 kb on - strandat 715.715 kb on + strandat 715.715 kb on + strandat 715.716 kb on - strandat 715.718 kb on + strandat 715.718 kb on + strandat 715.719 kb on - strandat 715.768 kb on + strandat 715.769 kb on - strandat 715.769 kb on - strandat 715.819 kb on + strand, within GFF3812at 715.819 kb on + strand, within GFF3812at 715.819 kb on + strand, within GFF3812at 715.819 kb on + strand, within GFF3812at 715.819 kb on + strand, within GFF3812at 715.819 kb on + strand, within GFF3812at 715.819 kb on + strand, within GFF3812at 715.820 kb on - strand, within GFF3812at 715.820 kb on - strand, within GFF3812at 715.885 kb on + strand, within GFF3812at 715.886 kb on - strand, within GFF3812at 715.886 kb on - strand, within GFF3812at 715.886 kb on - strand, within GFF3812at 716.135 kb on - strand, within GFF3812at 716.158 kb on + strand, within GFF3812at 716.159 kb on - strand, within GFF3812at 716.159 kb on - strand, within GFF3812at 716.224 kb on + strand, within GFF3812at 716.224 kb on + strand, within GFF3812at 716.224 kb on + strand, within GFF3812at 716.224 kb on + strand, within GFF3812at 716.225 kb on - strand, within GFF3812at 716.225 kb on - strand, within GFF3812at 716.225 kb on - strand, within GFF3812at 716.225 kb on - strand, within GFF3812at 716.225 kb on - strand, within GFF3812at 716.225 kb on - strand, within GFF3812at 716.239 kb on + strand, within GFF3812at 716.240 kb on - strand, within GFF3812at 716.299 kb on + strand, within GFF3812at 716.299 kb on + strand, within GFF3812at 716.299 kb on + strand, within GFF3812at 716.299 kb on + strand, within GFF3812at 716.300 kb on - strand, within GFF3812at 716.300 kb on - strand, within GFF3812at 716.300 kb on - strand, within GFF3812at 716.300 kb on - strand, within GFF3812at 716.300 kb on - strand, within GFF3812at 716.332 kb on + strand, within GFF3812at 716.332 kb on + strand, within GFF3812at 716.332 kb on + strand, within GFF3812at 716.332 kb on + strand, within GFF3812at 716.581 kb on + strandat 716.581 kb on + strandat 716.581 kb on + strandat 716.581 kb on + strandat 716.581 kb on + strandat 716.581 kb on + strandat 716.582 kb on - strandat 716.582 kb on - strandat 716.582 kb on - strandat 716.612 kb on - strandat 716.612 kb on - strandat 716.612 kb on - strandat 716.612 kb on - strandat 716.612 kb on - strandat 716.617 kb on + strandat 716.617 kb on + strandat 716.617 kb on + strandat 716.617 kb on + strandat 716.617 kb on + strandat 716.618 kb on - strandat 716.618 kb on - strandat 716.618 kb on - strandat 716.638 kb on + strandat 716.639 kb on - strandat 716.742 kb on + strandat 716.742 kb on + strandat 716.743 kb on - strandat 716.743 kb on - strandat 716.743 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 1
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714,726 - GFF3811 0.37 -0.8
714,761 + GFF3811 0.39 +0.5
714,761 + GFF3811 0.39 -1.1
714,761 + GFF3811 0.39 +0.4
714,761 + GFF3811 0.39 +0.7
714,761 + GFF3811 0.39 +0.6
714,762 - GFF3811 0.39 -0.4
714,797 + GFF3811 0.42 +1.1
714,836 + GFF3811 0.45 +0.2
714,836 + GFF3811 0.45 -0.2
714,837 - GFF3811 0.45 +0.8
714,920 + GFF3811 0.51 -0.2
714,920 + GFF3811 0.51 +0.7
714,921 - GFF3811 0.51 +0.1
714,921 - GFF3811 0.51 -0.4
715,031 + GFF3811 0.60 -0.1
715,031 + GFF3811 0.60 +0.5
715,032 - GFF3811 0.60 -0.3
715,032 - GFF3811 0.60 -0.4
715,032 - GFF3811 0.60 -0.1
715,307 + GFF3811 0.81 -0.2
715,307 + GFF3811 0.81 +0.8
715,308 - GFF3811 0.81 -0.6
715,308 - GFF3811 0.81 +0.4
715,325 + GFF3811 0.82 -0.0
715,326 - GFF3811 0.82 +0.5
715,326 - GFF3811 0.82 +0.6
715,326 - GFF3811 0.82 -0.2
715,326 - GFF3811 0.82 +0.5
715,326 - GFF3811 0.82 +1.3
715,409 + GFF3811 0.88 -1.1
715,409 + GFF3811 0.88 +0.8
715,409 + GFF3811 0.88 +0.7
715,409 + GFF3811 0.88 +0.1
715,409 + GFF3811 0.88 +0.4
715,409 + GFF3811 0.88 +0.4
715,410 - GFF3811 0.88 +0.3
715,410 - GFF3811 0.88 +1.3
715,410 - GFF3811 0.88 -0.2
715,410 - GFF3811 0.88 +0.7
715,410 - GFF3811 0.88 -1.0
715,439 + +0.0
715,440 - -0.0
715,440 - +0.2
715,440 - -0.1
715,587 + -0.0
715,587 + -0.3
715,587 + +0.2
715,587 + -1.0
715,587 + +0.7
715,587 + +0.6
715,587 + +0.2
715,587 + -0.0
715,588 - +0.2
715,588 - +0.2
715,588 - -0.0
715,637 + -1.1
715,638 - +0.6
715,658 + -0.2
715,658 + -0.0
715,661 + -1.2
715,661 + +0.1
715,661 + -2.1
715,661 + -0.3
715,661 + -0.0
715,661 + -0.0
715,662 - +0.0
715,662 - +0.0
715,662 - -0.0
715,662 - +0.1
715,662 - -0.4
715,693 - -0.2
715,715 + +0.3
715,715 + -0.4
715,716 - +0.2
715,718 + -0.3
715,718 + +0.3
715,719 - +0.0
715,768 + -0.0
715,769 - -0.0
715,769 - -0.2
715,819 + GFF3812 0.10 -0.0
715,819 + GFF3812 0.10 -1.6
715,819 + GFF3812 0.10 -0.3
715,819 + GFF3812 0.10 -0.9
715,819 + GFF3812 0.10 +1.0
715,819 + GFF3812 0.10 +0.2
715,819 + GFF3812 0.10 +0.1
715,820 - GFF3812 0.10 -0.4
715,820 - GFF3812 0.10 -0.7
715,885 + GFF3812 0.17 -0.4
715,886 - GFF3812 0.17 -0.5
715,886 - GFF3812 0.17 +0.5
715,886 - GFF3812 0.17 +0.0
716,135 - GFF3812 0.44 -0.0
716,158 + GFF3812 0.46 -2.0
716,159 - GFF3812 0.47 -0.3
716,159 - GFF3812 0.47 -0.6
716,224 + GFF3812 0.54 -0.6
716,224 + GFF3812 0.54 -0.4
716,224 + GFF3812 0.54 -0.4
716,224 + GFF3812 0.54 -1.0
716,225 - GFF3812 0.54 -2.4
716,225 - GFF3812 0.54 +0.2
716,225 - GFF3812 0.54 -0.2
716,225 - GFF3812 0.54 +0.8
716,225 - GFF3812 0.54 +0.3
716,225 - GFF3812 0.54 -0.4
716,239 + GFF3812 0.55 -0.4
716,240 - GFF3812 0.55 -0.5
716,299 + GFF3812 0.62 -1.7
716,299 + GFF3812 0.62 +0.3
716,299 + GFF3812 0.62 -0.7
716,299 + GFF3812 0.62 -0.1
716,300 - GFF3812 0.62 -1.0
716,300 - GFF3812 0.62 +0.4
716,300 - GFF3812 0.62 +1.7
716,300 - GFF3812 0.62 -0.7
716,300 - GFF3812 0.62 -0.2
716,332 + GFF3812 0.65 +0.0
716,332 + GFF3812 0.65 -0.3
716,332 + GFF3812 0.65 +0.4
716,332 + GFF3812 0.65 -0.4
716,581 + -0.4
716,581 + +0.3
716,581 + -0.3
716,581 + -0.1
716,581 + -0.6
716,581 + -0.5
716,582 - -0.0
716,582 - -0.1
716,582 - +0.1
716,612 - +0.3
716,612 - -0.0
716,612 - +0.0
716,612 - -0.2
716,612 - -1.7
716,617 + -0.1
716,617 + -0.4
716,617 + +1.0
716,617 + +0.6
716,617 + +0.3
716,618 - -1.2
716,618 - +0.8
716,618 - -0.3
716,638 + -0.6
716,639 - +0.2
716,742 + -1.4
716,742 + -0.2
716,743 - -1.0
716,743 - -0.3
716,743 - -1.7

Or see this region's nucleotide sequence