Experiment: Ying_OrganicAcid7 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3427 and GFF3428 overlap by 4 nucleotides GFF3428 and GFF3429 are separated by 27 nucleotides GFF3429 and GFF3430 are separated by 9 nucleotides GFF3430 and GFF3431 are separated by 1 nucleotides
GFF3427 - Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1), at 310,264 to 311,901
GFF3427
GFF3428 - Ferredoxin, at 311,898 to 312,227
GFF3428
GFF3429 - Alkanesulfonates-binding protein, at 312,255 to 313,304
GFF3429
GFF3430 - Alkanesulfonates transport system permease protein, at 313,314 to 314,159
GFF3430
GFF3431 - Alkanesulfonates transport system permease protein, at 314,161 to 314,907
GFF3431
Position (kb) 312
313
314 Strain fitness (log2 ratio) -1
0
1 at 311.315 kb on - strand, within GFF3427 at 311.315 kb on - strand, within GFF3427 at 311.566 kb on + strand, within GFF3427 at 311.566 kb on + strand, within GFF3427 at 311.725 kb on + strand, within GFF3427 at 311.726 kb on - strand, within GFF3427 at 312.045 kb on + strand, within GFF3428 at 312.066 kb on + strand, within GFF3428 at 312.066 kb on + strand, within GFF3428 at 312.067 kb on - strand, within GFF3428 at 312.142 kb on - strand, within GFF3428 at 312.465 kb on + strand, within GFF3429 at 312.466 kb on - strand, within GFF3429 at 312.532 kb on - strand, within GFF3429 at 312.595 kb on - strand, within GFF3429
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 1 remove 311,315 - GFF3427 0.64 -0.4 311,315 - GFF3427 0.64 +0.2 311,566 + GFF3427 0.79 +0.3 311,566 + GFF3427 0.79 -0.4 311,725 + GFF3427 0.89 -0.3 311,726 - GFF3427 0.89 -0.4 312,045 + GFF3428 0.45 -1.2 312,066 + GFF3428 0.51 -0.4 312,066 + GFF3428 0.51 +0.2 312,067 - GFF3428 0.51 -0.6 312,142 - GFF3428 0.74 -0.6 312,465 + GFF3429 0.20 +0.3 312,466 - GFF3429 0.20 +0.8 312,532 - GFF3429 0.26 +0.2 312,595 - GFF3429 0.32 -0.0
Or see this region's nucleotide sequence