Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3224

Experiment: Ying_OrganicAcid7 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 1
104,808	+		GFF3223	0.37	+1.2
104,970	+		GFF3223	0.48	-0.4
104,970	+		GFF3223	0.48	+0.3
105,004	-		GFF3223	0.50	-0.2
105,004	-		GFF3223	0.50	-0.7
105,085	-		GFF3223	0.56	-0.4
105,453	+		GFF3223	0.81	+0.1
105,540	+		GFF3223	0.87	+0.6
105,540	+		GFF3223	0.87	+0.1
105,564	+		GFF3223	0.89	+0.8
105,574	-		GFF3223	0.90	-0.0
105,914	+				-0.4
105,914	+				-1.2
105,914	+				-0.1
105,914	+				+0.1
106,134	-		GFF3224	0.21	+0.4
106,200	+		GFF3224	0.24	-0.1
106,200	+		GFF3224	0.24	-0.0
106,201	-		GFF3224	0.24	-0.1
106,290	-		GFF3224	0.29	-0.4
106,290	-		GFF3224	0.29	+0.0
106,408	+		GFF3224	0.34	-0.3
106,408	+		GFF3224	0.34	-0.0
106,409	-		GFF3224	0.35	-0.6
106,751	-		GFF3224	0.52	-0.0
106,800	-		GFF3224	0.54	+0.0
107,300	+		GFF3224	0.79	+0.7
107,467	+		GFF3224	0.88	+0.6
107,468	-		GFF3224	0.88	-0.5
107,468	-		GFF3224	0.88	-0.3
107,468	-		GFF3224	0.88	+0.0
107,606	+				+0.2
107,606	+				-0.0
107,611	+				-0.0
107,611	+				+0.3
107,611	+				+0.8
107,611	+				+0.4
107,611	+				+1.6
107,708	-				-0.4
107,727	-				+0.4
107,727	-				-0.0
107,895	+		GFF3225	0.12	+0.3
107,908	-		GFF3225	0.13	+0.8
107,970	+		GFF3225	0.19	+0.7
107,970	+		GFF3225	0.19	-0.1
107,971	-		GFF3225	0.19	-0.0
107,971	-		GFF3225	0.19	+0.0
107,971	-		GFF3225	0.19	+0.4
108,012	+		GFF3225	0.23	-0.1
108,012	+		GFF3225	0.23	-0.0
108,012	+		GFF3225	0.23	-0.2
108,036	+		GFF3225	0.25	-0.7
108,036	+		GFF3225	0.25	-0.0
108,036	+		GFF3225	0.25	+0.3
108,037	-		GFF3225	0.25	-0.6
108,045	+		GFF3225	0.26	-0.0
108,045	+		GFF3225	0.26	+0.3
108,045	+		GFF3225	0.26	-0.0
108,046	-		GFF3225	0.26	-0.9
108,046	-		GFF3225	0.26	-0.1
108,046	-		GFF3225	0.26	+0.2
108,273	+		GFF3225	0.46	+0.2
108,274	-		GFF3225	0.47	-0.2
108,274	-		GFF3225	0.47	+1.0
108,274	-		GFF3225	0.47	-0.6
108,290	+		GFF3225	0.48	+0.7
108,291	-		GFF3225	0.48	-1.4
108,291	-		GFF3225	0.48	-1.0
108,429	+		GFF3225	0.61	+0.6
108,430	-		GFF3225	0.61	+0.9
108,553	-		GFF3225	0.72	-1.1