Experiment: Ying_OrganicAcid7 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3216 and GFF3217 are separated by 7 nucleotides GFF3217 and GFF3218 overlap by 4 nucleotides GFF3218 and GFF3219 are separated by 205 nucleotides GFF3219 and GFF3220 are separated by 4 nucleotides GFF3220 and GFF3221 are separated by 98 nucleotides
GFF3216 - hypothetical protein, at 99,054 to 99,578
GFF3216
GFF3217 - hypothetical protein, at 99,586 to 99,996
GFF3217
GFF3218 - hypothetical protein, at 99,993 to 100,160
GFF3218
GFF3219 - hypothetical protein, at 100,366 to 101,523
GFF3219
GFF3220 - hypothetical protein, at 101,528 to 101,842
GFF3220
GFF3221 - hypothetical protein, at 101,941 to 103,146
GFF3221
Position (kb) 100
101
102 Strain fitness (log2 ratio) -1
0
1 at 100.342 kb on + strand at 100.504 kb on + strand, within GFF3219 at 100.504 kb on + strand, within GFF3219 at 100.504 kb on + strand, within GFF3219 at 100.505 kb on - strand, within GFF3219 at 101.078 kb on - strand, within GFF3219 at 101.348 kb on - strand, within GFF3219 at 101.480 kb on - strand at 101.873 kb on - strand at 102.035 kb on + strand at 102.063 kb on - strand, within GFF3221 at 102.063 kb on - strand, within GFF3221 at 102.146 kb on + strand, within GFF3221 at 102.147 kb on - strand, within GFF3221 at 102.521 kb on + strand, within GFF3221 at 102.522 kb on - strand, within GFF3221 at 102.522 kb on - strand, within GFF3221
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 1 remove 100,342 + -0.2 100,504 + GFF3219 0.12 +0.8 100,504 + GFF3219 0.12 -0.2 100,504 + GFF3219 0.12 +0.1 100,505 - GFF3219 0.12 -0.7 101,078 - GFF3219 0.61 -0.6 101,348 - GFF3219 0.85 +1.3 101,480 - +0.8 101,873 - -0.2 102,035 + -0.2 102,063 - GFF3221 0.10 +0.7 102,063 - GFF3221 0.10 -0.7 102,146 + GFF3221 0.17 +0.2 102,147 - GFF3221 0.17 +0.7 102,521 + GFF3221 0.48 +0.9 102,522 - GFF3221 0.48 -1.6 102,522 - GFF3221 0.48 +1.1
Or see this region's nucleotide sequence