Experiment: Ying_OrganicAcid7 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2872 and GFF2873 overlap by 4 nucleotides GFF2873 and GFF2874 are separated by 1 nucleotides GFF2874 and GFF2875 are separated by 2 nucleotides GFF2875 and GFF2876 are separated by 100 nucleotides
GFF2872 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 460,366 to 461,358
GFF2872
GFF2873 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 461,355 to 462,116
GFF2873
GFF2874 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 462,118 to 462,873
GFF2874
GFF2875 - Transcriptional regulator, LysR family, at 462,876 to 463,769
GFF2875
GFF2876 - Putative drug efflux protein, at 463,870 to 465,081
GFF2876
Position (kb) 462
463 Strain fitness (log2 ratio) -1
0
1
2 at 461.197 kb on + strand, within GFF2872 at 461.400 kb on + strand at 461.805 kb on + strand, within GFF2873 at 461.806 kb on - strand, within GFF2873 at 462.173 kb on - strand at 462.173 kb on - strand at 462.953 kb on - strand at 462.955 kb on + strand at 463.255 kb on + strand, within GFF2875 at 463.256 kb on - strand, within GFF2875
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 1 remove 461,197 + GFF2872 0.84 +2.4 461,400 + -1.0 461,805 + GFF2873 0.59 -0.7 461,806 - GFF2873 0.59 +0.7 462,173 - -0.0 462,173 - -1.1 462,953 - -0.6 462,955 + +0.1 463,255 + GFF2875 0.42 -0.1 463,256 - GFF2875 0.43 -1.0
Or see this region's nucleotide sequence