Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2783

Experiment: Ying_OrganicAcid7 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2781 and GFF2782 are separated by 13 nucleotidesGFF2782 and GFF2783 are separated by 7 nucleotidesGFF2783 and GFF2784 overlap by 4 nucleotides GFF2781 - hypothetical protein, at 381,489 to 381,653 GFF2781 GFF2782 - Probable transmembrane protein, at 381,667 to 382,344 GFF2782 GFF2783 - Sensor histidine kinase, at 382,352 to 383,704 GFF2783 GFF2784 - Sensor histidine kinase, at 383,701 to 385,041 GFF2784 Position (kb) 382 383 384Strain fitness (log2 ratio) -2 -1 0 1at 381.367 kb on + strandat 381.368 kb on - strandat 381.519 kb on + strand, within GFF2781at 381.520 kb on - strand, within GFF2781at 381.824 kb on + strand, within GFF2782at 381.824 kb on + strand, within GFF2782at 381.824 kb on + strand, within GFF2782at 381.825 kb on - strand, within GFF2782at 381.825 kb on - strand, within GFF2782at 381.825 kb on - strand, within GFF2782at 381.827 kb on + strand, within GFF2782at 381.827 kb on + strand, within GFF2782at 381.843 kb on - strand, within GFF2782at 381.914 kb on + strand, within GFF2782at 381.917 kb on + strand, within GFF2782at 381.917 kb on + strand, within GFF2782at 381.917 kb on + strand, within GFF2782at 381.918 kb on - strand, within GFF2782at 381.930 kb on - strand, within GFF2782at 381.930 kb on - strand, within GFF2782at 382.187 kb on + strand, within GFF2782at 382.187 kb on + strand, within GFF2782at 382.187 kb on - strand, within GFF2782at 382.188 kb on - strand, within GFF2782at 382.188 kb on - strand, within GFF2782at 382.188 kb on - strand, within GFF2782at 382.199 kb on + strand, within GFF2782at 382.199 kb on + strand, within GFF2782at 382.409 kb on - strandat 382.409 kb on - strandat 382.599 kb on + strand, within GFF2783at 382.599 kb on + strand, within GFF2783at 382.599 kb on + strand, within GFF2783at 382.599 kb on + strand, within GFF2783at 382.599 kb on + strand, within GFF2783at 382.599 kb on + strand, within GFF2783at 382.600 kb on - strand, within GFF2783at 382.639 kb on - strand, within GFF2783at 382.639 kb on - strand, within GFF2783at 383.455 kb on - strand, within GFF2783at 383.601 kb on + strandat 383.601 kb on + strandat 383.602 kb on - strandat 383.602 kb on - strandat 383.602 kb on - strandat 383.715 kb on + strandat 383.716 kb on - strandat 383.716 kb on - strandat 383.716 kb on - strandat 384.494 kb on + strand, within GFF2784at 384.494 kb on + strand, within GFF2784at 384.495 kb on - strand, within GFF2784at 384.495 kb on - strand, within GFF2784at 384.557 kb on + strand, within GFF2784at 384.557 kb on + strand, within GFF2784at 384.557 kb on + strand, within GFF2784at 384.558 kb on - strand, within GFF2784at 384.698 kb on + strand, within GFF2784at 384.698 kb on + strand, within GFF2784at 384.699 kb on - strand, within GFF2784at 384.699 kb on - strand, within GFF2784at 384.699 kb on - strand, within GFF2784

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 1
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381,367 + +0.1
381,368 - -0.1
381,519 + GFF2781 0.18 +0.3
381,520 - GFF2781 0.19 -2.2
381,824 + GFF2782 0.23 -1.5
381,824 + GFF2782 0.23 +0.8
381,824 + GFF2782 0.23 +0.0
381,825 - GFF2782 0.23 -0.8
381,825 - GFF2782 0.23 +0.3
381,825 - GFF2782 0.23 +0.2
381,827 + GFF2782 0.24 -0.0
381,827 + GFF2782 0.24 +0.8
381,843 - GFF2782 0.26 -0.0
381,914 + GFF2782 0.36 -0.3
381,917 + GFF2782 0.37 +0.9
381,917 + GFF2782 0.37 -0.2
381,917 + GFF2782 0.37 -1.6
381,918 - GFF2782 0.37 +0.7
381,930 - GFF2782 0.39 +0.2
381,930 - GFF2782 0.39 -0.0
382,187 + GFF2782 0.77 -0.3
382,187 + GFF2782 0.77 -0.5
382,187 - GFF2782 0.77 +0.4
382,188 - GFF2782 0.77 +0.3
382,188 - GFF2782 0.77 +1.0
382,188 - GFF2782 0.77 +0.1
382,199 + GFF2782 0.78 +0.7
382,199 + GFF2782 0.78 +0.4
382,409 - +1.0
382,409 - -0.2
382,599 + GFF2783 0.18 -0.2
382,599 + GFF2783 0.18 +0.4
382,599 + GFF2783 0.18 +0.1
382,599 + GFF2783 0.18 -0.2
382,599 + GFF2783 0.18 +0.5
382,599 + GFF2783 0.18 +0.3
382,600 - GFF2783 0.18 +0.5
382,639 - GFF2783 0.21 -0.8
382,639 - GFF2783 0.21 +0.5
383,455 - GFF2783 0.82 -0.2
383,601 + -0.0
383,601 + +0.5
383,602 - -1.3
383,602 - -0.3
383,602 - +0.5
383,715 + +0.1
383,716 - +0.6
383,716 - -0.3
383,716 - -0.8
384,494 + GFF2784 0.59 +0.3
384,494 + GFF2784 0.59 -1.4
384,495 - GFF2784 0.59 +0.3
384,495 - GFF2784 0.59 -0.1
384,557 + GFF2784 0.64 -0.0
384,557 + GFF2784 0.64 -0.8
384,557 + GFF2784 0.64 +0.8
384,558 - GFF2784 0.64 -0.7
384,698 + GFF2784 0.74 +0.1
384,698 + GFF2784 0.74 +0.1
384,699 - GFF2784 0.74 -0.3
384,699 - GFF2784 0.74 -0.5
384,699 - GFF2784 0.74 -0.1

Or see this region's nucleotide sequence