Experiment: Ying_OrganicAcid7 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2716 and GFF2717 are separated by 36 nucleotides GFF2717 and GFF2718 overlap by 4 nucleotides GFF2718 and GFF2719 are separated by 109 nucleotides
GFF2716 - Predicted endonuclease distantly related to archaeal Holliday junction resolvase, at 307,363 to 307,767
GFF2716
GFF2717 - Phosphoheptose isomerase (EC 5.3.1.-), at 307,804 to 308,427
GFF2717
GFF2718 - 21 kDa hemolysin precursor, at 308,424 to 309,083
GFF2718
GFF2719 - 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), at 309,193 to 310,095
GFF2719
Position (kb) 308
309
310 Strain fitness (log2 ratio) -2
-1
0
1
2 at 307.777 kb on + strand at 307.777 kb on + strand at 307.777 kb on + strand at 307.777 kb on + strand at 307.777 kb on + strand at 307.778 kb on - strand at 307.793 kb on - strand at 307.855 kb on + strand at 307.855 kb on + strand at 307.855 kb on + strand at 307.856 kb on - strand at 307.856 kb on - strand at 307.856 kb on - strand at 307.856 kb on - strand at 307.856 kb on - strand at 307.856 kb on - strand at 307.856 kb on - strand at 308.406 kb on + strand at 308.670 kb on + strand, within GFF2718 at 308.670 kb on + strand, within GFF2718 at 308.671 kb on - strand, within GFF2718 at 308.671 kb on - strand, within GFF2718 at 308.671 kb on - strand, within GFF2718 at 308.671 kb on - strand, within GFF2718 at 308.916 kb on + strand, within GFF2718 at 308.916 kb on + strand, within GFF2718 at 308.916 kb on + strand, within GFF2718 at 308.917 kb on - strand, within GFF2718 at 309.081 kb on + strand at 309.082 kb on - strand at 309.082 kb on - strand at 309.082 kb on - strand at 309.194 kb on + strand at 309.194 kb on + strand at 309.195 kb on - strand at 309.195 kb on - strand at 309.195 kb on - strand at 309.195 kb on - strand at 309.195 kb on - strand at 309.195 kb on - strand at 309.195 kb on - strand at 309.195 kb on - strand at 309.195 kb on - strand at 309.260 kb on + strand at 309.260 kb on + strand at 309.261 kb on - strand at 309.261 kb on - strand at 310.070 kb on + strand at 310.070 kb on + strand at 310.070 kb on + strand at 310.071 kb on - strand at 310.071 kb on - strand at 310.071 kb on - strand at 310.071 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 1 remove 307,777 + +0.4 307,777 + -0.4 307,777 + -0.4 307,777 + -0.3 307,777 + -0.0 307,778 - -0.2 307,793 - +1.1 307,855 + -0.2 307,855 + -0.7 307,855 + +0.1 307,856 - +0.4 307,856 - -0.1 307,856 - +0.4 307,856 - -1.0 307,856 - -0.3 307,856 - -0.4 307,856 - -0.7 308,406 + -0.3 308,670 + GFF2718 0.37 -1.5 308,670 + GFF2718 0.37 -0.7 308,671 - GFF2718 0.37 -0.7 308,671 - GFF2718 0.37 -1.0 308,671 - GFF2718 0.37 -2.0 308,671 - GFF2718 0.37 -1.4 308,916 + GFF2718 0.75 -0.6 308,916 + GFF2718 0.75 -0.8 308,916 + GFF2718 0.75 -0.5 308,917 - GFF2718 0.75 -0.4 309,081 + -2.0 309,082 - +0.4 309,082 - -0.0 309,082 - +0.2 309,194 + +0.5 309,194 + -0.5 309,195 - +1.5 309,195 - -1.3 309,195 - +1.8 309,195 - -0.2 309,195 - -0.5 309,195 - +1.1 309,195 - -0.6 309,195 - +0.4 309,195 - +0.0 309,260 + +1.3 309,260 + -0.1 309,261 - -0.0 309,261 - -0.1 310,070 + +1.2 310,070 + -0.4 310,070 + +0.3 310,071 - +0.4 310,071 - -0.2 310,071 - +0.6 310,071 - -0.4
Or see this region's nucleotide sequence