Experiment: Ying_OrganicAcid7 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2687 and GFF2688 are separated by 88 nucleotides GFF2688 and GFF2689 are separated by 13 nucleotides GFF2689 and GFF2690 are separated by 3 nucleotides GFF2690 and GFF2691 overlap by 38 nucleotides
GFF2687 - putative exported protein, at 278,302 to 279,267
GFF2687
GFF2688 - Transcriptional regulator, MarR family, at 279,356 to 279,865
GFF2688
GFF2689 - Glycine betaine transporter OpuD, at 279,879 to 281,393
GFF2689
GFF2690 - Multiple antibiotic resistance protein marC, at 281,397 to 282,080
GFF2690
GFF2691 - Glutathione S-transferase domain protein, at 282,043 to 282,717
GFF2691
Position (kb) 279
280
281
282 Strain fitness (log2 ratio) -2
-1
0
1 at 278.897 kb on + strand, within GFF2687 at 278.898 kb on - strand, within GFF2687 at 278.942 kb on + strand, within GFF2687 at 279.317 kb on + strand at 279.317 kb on + strand at 279.317 kb on + strand at 279.317 kb on + strand at 279.318 kb on - strand at 279.318 kb on - strand at 279.318 kb on - strand at 279.318 kb on - strand at 279.318 kb on - strand at 279.318 kb on - strand at 279.318 kb on - strand at 279.318 kb on - strand at 279.416 kb on + strand, within GFF2688 at 279.417 kb on - strand, within GFF2688 at 279.707 kb on + strand, within GFF2688 at 280.005 kb on + strand at 280.297 kb on - strand, within GFF2689 at 280.297 kb on - strand, within GFF2689 at 280.717 kb on - strand, within GFF2689 at 280.797 kb on + strand, within GFF2689 at 280.797 kb on + strand, within GFF2689 at 281.602 kb on - strand, within GFF2690 at 281.769 kb on + strand, within GFF2690 at 281.919 kb on + strand, within GFF2690 at 282.389 kb on + strand, within GFF2691 at 282.389 kb on + strand, within GFF2691 at 282.389 kb on + strand, within GFF2691 at 282.389 kb on + strand, within GFF2691 at 282.390 kb on - strand, within GFF2691
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 1 remove 278,897 + GFF2687 0.62 +0.5 278,898 - GFF2687 0.62 +0.1 278,942 + GFF2687 0.66 +0.4 279,317 + -0.1 279,317 + -0.5 279,317 + -0.6 279,317 + -0.3 279,318 - +0.7 279,318 - +0.1 279,318 - +0.4 279,318 - +0.0 279,318 - -0.5 279,318 - +0.2 279,318 - -0.6 279,318 - -0.3 279,416 + GFF2688 0.12 -0.2 279,417 - GFF2688 0.12 +0.3 279,707 + GFF2688 0.69 +0.2 280,005 + +0.4 280,297 - GFF2689 0.28 -1.8 280,297 - GFF2689 0.28 -0.3 280,717 - GFF2689 0.55 -1.2 280,797 + GFF2689 0.61 -0.3 280,797 + GFF2689 0.61 -0.2 281,602 - GFF2690 0.30 +0.7 281,769 + GFF2690 0.54 -0.4 281,919 + GFF2690 0.76 -1.5 282,389 + GFF2691 0.51 -0.4 282,389 + GFF2691 0.51 +1.3 282,389 + GFF2691 0.51 -1.0 282,389 + GFF2691 0.51 -0.1 282,390 - GFF2691 0.51 -0.4
Or see this region's nucleotide sequence