Experiment: Ying_OrganicAcid7 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2643 and GFF2644 are separated by 11 nucleotides GFF2644 and GFF2645 are separated by 120 nucleotides GFF2645 and GFF2646 are separated by 133 nucleotides
GFF2643 - hypothetical protein, at 237,790 to 238,473
GFF2643
GFF2644 - hypothetical protein, at 238,485 to 238,772
GFF2644
GFF2645 - Glutamate--cysteine ligase (EC 6.3.2.2), divergent, of Alpha- and Beta-proteobacteria type, at 238,893 to 240,185
GFF2645
GFF2646 - Kup system potassium uptake protein, at 240,319 to 242,187
GFF2646
Position (kb) 238
239
240
241 Strain fitness (log2 ratio) -2
-1
0
1
2 at 237.925 kb on + strand, within GFF2643 at 237.925 kb on + strand, within GFF2643 at 237.925 kb on + strand, within GFF2643 at 237.925 kb on + strand, within GFF2643 at 237.925 kb on + strand, within GFF2643 at 237.926 kb on - strand, within GFF2643 at 237.926 kb on - strand, within GFF2643 at 238.048 kb on + strand, within GFF2643 at 238.049 kb on - strand, within GFF2643 at 238.196 kb on - strand, within GFF2643 at 238.291 kb on + strand, within GFF2643 at 238.291 kb on + strand, within GFF2643 at 238.291 kb on + strand, within GFF2643 at 238.291 kb on + strand, within GFF2643 at 238.292 kb on - strand, within GFF2643 at 238.312 kb on + strand, within GFF2643 at 238.312 kb on + strand, within GFF2643 at 238.313 kb on - strand, within GFF2643 at 238.313 kb on - strand, within GFF2643 at 238.313 kb on - strand, within GFF2643 at 238.630 kb on + strand, within GFF2644 at 238.630 kb on + strand, within GFF2644 at 238.630 kb on + strand, within GFF2644 at 238.630 kb on + strand, within GFF2644 at 238.630 kb on + strand, within GFF2644 at 238.631 kb on - strand, within GFF2644 at 238.631 kb on - strand, within GFF2644 at 238.631 kb on - strand, within GFF2644 at 238.852 kb on + strand at 238.852 kb on + strand at 238.852 kb on + strand at 238.852 kb on + strand at 238.853 kb on - strand at 238.853 kb on - strand at 238.853 kb on - strand at 238.853 kb on - strand at 238.853 kb on - strand at 238.853 kb on - strand at 238.853 kb on - strand at 238.893 kb on - strand at 238.893 kb on - strand at 239.019 kb on + strand at 239.019 kb on + strand at 239.020 kb on - strand at 239.020 kb on - strand at 239.251 kb on - strand, within GFF2645 at 239.251 kb on - strand, within GFF2645 at 239.466 kb on + strand, within GFF2645 at 239.467 kb on - strand, within GFF2645 at 239.925 kb on + strand, within GFF2645 at 239.926 kb on - strand, within GFF2645 at 240.016 kb on - strand, within GFF2645 at 240.096 kb on + strand at 240.097 kb on - strand at 240.177 kb on + strand at 240.177 kb on + strand at 240.177 kb on + strand at 240.376 kb on + strand at 240.403 kb on + strand at 240.460 kb on + strand at 240.461 kb on - strand at 240.514 kb on + strand, within GFF2646 at 240.514 kb on + strand, within GFF2646 at 240.514 kb on + strand, within GFF2646 at 240.514 kb on + strand, within GFF2646 at 240.514 kb on + strand, within GFF2646 at 240.515 kb on - strand, within GFF2646 at 240.515 kb on - strand, within GFF2646 at 240.515 kb on - strand, within GFF2646 at 240.515 kb on - strand, within GFF2646 at 240.642 kb on - strand, within GFF2646 at 240.658 kb on + strand, within GFF2646 at 240.658 kb on + strand, within GFF2646 at 240.658 kb on + strand, within GFF2646 at 240.659 kb on - strand, within GFF2646 at 240.742 kb on + strand, within GFF2646 at 240.742 kb on + strand, within GFF2646 at 240.743 kb on - strand, within GFF2646 at 240.743 kb on - strand, within GFF2646 at 240.743 kb on - strand, within GFF2646 at 240.743 kb on - strand, within GFF2646 at 240.743 kb on - strand, within GFF2646 at 240.743 kb on - strand, within GFF2646 at 241.013 kb on - strand, within GFF2646 at 241.013 kb on - strand, within GFF2646 at 241.093 kb on + strand, within GFF2646 at 241.093 kb on + strand, within GFF2646 at 241.093 kb on + strand, within GFF2646 at 241.094 kb on - strand, within GFF2646 at 241.094 kb on - strand, within GFF2646 at 241.094 kb on - strand, within GFF2646
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 1 remove 237,925 + GFF2643 0.20 -0.0 237,925 + GFF2643 0.20 +0.4 237,925 + GFF2643 0.20 -0.2 237,925 + GFF2643 0.20 -0.1 237,925 + GFF2643 0.20 +0.6 237,926 - GFF2643 0.20 -0.4 237,926 - GFF2643 0.20 -0.9 238,048 + GFF2643 0.38 -0.1 238,049 - GFF2643 0.38 +0.7 238,196 - GFF2643 0.59 -0.4 238,291 + GFF2643 0.73 -0.8 238,291 + GFF2643 0.73 -0.1 238,291 + GFF2643 0.73 -0.6 238,291 + GFF2643 0.73 +0.1 238,292 - GFF2643 0.73 -0.2 238,312 + GFF2643 0.76 +0.2 238,312 + GFF2643 0.76 -0.2 238,313 - GFF2643 0.76 +0.6 238,313 - GFF2643 0.76 +0.4 238,313 - GFF2643 0.76 +0.9 238,630 + GFF2644 0.50 +0.1 238,630 + GFF2644 0.50 -1.0 238,630 + GFF2644 0.50 +1.2 238,630 + GFF2644 0.50 +1.0 238,630 + GFF2644 0.50 +0.8 238,631 - GFF2644 0.51 -0.4 238,631 - GFF2644 0.51 +0.4 238,631 - GFF2644 0.51 +0.1 238,852 + -0.0 238,852 + -0.0 238,852 + -0.2 238,852 + +1.1 238,853 - +0.7 238,853 - +0.2 238,853 - -0.2 238,853 - -0.5 238,853 - -1.0 238,853 - -0.8 238,853 - +0.5 238,893 - +0.6 238,893 - +0.0 239,019 + -0.7 239,019 + +0.1 239,020 - +0.5 239,020 - +0.4 239,251 - GFF2645 0.28 +0.5 239,251 - GFF2645 0.28 +0.2 239,466 + GFF2645 0.44 +0.6 239,467 - GFF2645 0.44 +0.6 239,925 + GFF2645 0.80 -0.7 239,926 - GFF2645 0.80 +0.3 240,016 - GFF2645 0.87 +0.6 240,096 + +0.1 240,097 - +0.4 240,177 + +0.2 240,177 + +0.6 240,177 + +1.1 240,376 + +0.2 240,403 + +0.6 240,460 + +0.2 240,461 - +0.7 240,514 + GFF2646 0.10 +0.7 240,514 + GFF2646 0.10 -0.4 240,514 + GFF2646 0.10 -0.0 240,514 + GFF2646 0.10 -0.2 240,514 + GFF2646 0.10 -0.4 240,515 - GFF2646 0.10 +1.2 240,515 - GFF2646 0.10 -0.6 240,515 - GFF2646 0.10 +1.4 240,515 - GFF2646 0.10 -2.5 240,642 - GFF2646 0.17 +0.8 240,658 + GFF2646 0.18 -0.9 240,658 + GFF2646 0.18 -0.2 240,658 + GFF2646 0.18 +0.6 240,659 - GFF2646 0.18 +0.3 240,742 + GFF2646 0.23 +1.8 240,742 + GFF2646 0.23 +0.2 240,743 - GFF2646 0.23 -0.6 240,743 - GFF2646 0.23 +0.6 240,743 - GFF2646 0.23 -0.6 240,743 - GFF2646 0.23 +0.5 240,743 - GFF2646 0.23 -0.1 240,743 - GFF2646 0.23 +0.1 241,013 - GFF2646 0.37 -0.8 241,013 - GFF2646 0.37 -0.9 241,093 + GFF2646 0.41 +0.3 241,093 + GFF2646 0.41 +0.2 241,093 + GFF2646 0.41 -0.1 241,094 - GFF2646 0.41 -0.1 241,094 - GFF2646 0.41 -0.1 241,094 - GFF2646 0.41 -0.4
Or see this region's nucleotide sequence