Experiment: Ying_OrganicAcid7 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2601 and GFF2602 are separated by 76 nucleotides GFF2602 and GFF2603 are separated by 125 nucleotides GFF2603 and GFF2604 are separated by 8 nucleotides GFF2604 and GFF2605 are separated by 15 nucleotides GFF2605 and GFF2606 overlap by 4 nucleotides
GFF2601 - FIG00787877: hypothetical protein, at 193,374 to 194,717
GFF2601
GFF2602 - NTP pyrophosphohydrolases including oxidative damage repair enzymes, at 194,794 to 195,300
GFF2602
GFF2603 - NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2), at 195,426 to 196,526
GFF2603
GFF2604 - Aspartate 1-decarboxylase (EC 4.1.1.11), at 196,535 to 196,885
GFF2604
GFF2605 - NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2), at 196,901 to 197,224
GFF2605
GFF2606 - NAD(P) transhydrogenase subunit beta (EC 1.6.1.2), at 197,221 to 198,645
GFF2606
Position (kb) 195
196
197 Strain fitness (log2 ratio) -2
-1
0
1 at 194.748 kb on + strand at 194.749 kb on - strand at 195.020 kb on + strand, within GFF2602 at 195.021 kb on - strand, within GFF2602 at 195.021 kb on - strand, within GFF2602 at 195.077 kb on + strand, within GFF2602 at 195.077 kb on + strand, within GFF2602 at 195.302 kb on - strand at 195.391 kb on + strand at 195.391 kb on + strand at 195.392 kb on - strand at 195.392 kb on - strand at 195.392 kb on - strand at 195.392 kb on - strand at 195.403 kb on + strand at 195.404 kb on - strand at 195.404 kb on - strand at 195.410 kb on - strand at 195.471 kb on + strand at 195.471 kb on + strand at 195.472 kb on - strand at 195.543 kb on + strand, within GFF2603 at 195.543 kb on + strand, within GFF2603 at 195.544 kb on - strand, within GFF2603 at 195.807 kb on + strand, within GFF2603 at 195.808 kb on - strand, within GFF2603 at 195.808 kb on - strand, within GFF2603 at 195.808 kb on - strand, within GFF2603 at 195.837 kb on + strand, within GFF2603 at 195.838 kb on - strand, within GFF2603 at 196.039 kb on - strand, within GFF2603 at 196.398 kb on + strand, within GFF2603 at 196.398 kb on + strand, within GFF2603 at 196.398 kb on + strand, within GFF2603 at 196.398 kb on - strand, within GFF2603 at 196.399 kb on - strand, within GFF2603 at 196.399 kb on - strand, within GFF2603 at 196.399 kb on - strand, within GFF2603 at 196.587 kb on - strand, within GFF2604 at 196.587 kb on - strand, within GFF2604 at 196.661 kb on + strand, within GFF2604 at 196.661 kb on + strand, within GFF2604 at 196.662 kb on - strand, within GFF2604 at 196.662 kb on - strand, within GFF2604 at 196.662 kb on - strand, within GFF2604 at 196.694 kb on + strand, within GFF2604 at 196.694 kb on + strand, within GFF2604 at 196.694 kb on + strand, within GFF2604 at 196.695 kb on - strand, within GFF2604 at 196.695 kb on - strand, within GFF2604 at 196.695 kb on - strand, within GFF2604 at 196.695 kb on - strand, within GFF2604 at 196.790 kb on + strand, within GFF2604 at 196.911 kb on + strand at 196.912 kb on - strand at 196.955 kb on + strand, within GFF2605 at 196.955 kb on + strand, within GFF2605 at 196.955 kb on + strand, within GFF2605 at 196.955 kb on + strand, within GFF2605 at 196.955 kb on + strand, within GFF2605 at 196.956 kb on - strand, within GFF2605 at 196.956 kb on - strand, within GFF2605 at 196.956 kb on - strand, within GFF2605 at 196.956 kb on - strand, within GFF2605 at 196.956 kb on - strand, within GFF2605 at 196.956 kb on - strand, within GFF2605 at 196.956 kb on - strand, within GFF2605 at 196.956 kb on - strand, within GFF2605 at 196.956 kb on - strand, within GFF2605
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 1 remove 194,748 + +0.4 194,749 - -0.2 195,020 + GFF2602 0.45 +0.8 195,021 - GFF2602 0.45 -0.5 195,021 - GFF2602 0.45 -0.2 195,077 + GFF2602 0.56 -0.4 195,077 + GFF2602 0.56 +0.3 195,302 - -0.3 195,391 + -0.4 195,391 + +0.3 195,392 - -0.8 195,392 - +0.0 195,392 - -0.7 195,392 - -1.1 195,403 + -0.1 195,404 - +0.3 195,404 - +0.2 195,410 - +0.1 195,471 + +0.2 195,471 + +0.3 195,472 - -0.4 195,543 + GFF2603 0.11 -0.7 195,543 + GFF2603 0.11 +0.2 195,544 - GFF2603 0.11 -0.4 195,807 + GFF2603 0.35 -0.9 195,808 - GFF2603 0.35 -0.4 195,808 - GFF2603 0.35 +0.1 195,808 - GFF2603 0.35 -1.0 195,837 + GFF2603 0.37 +0.0 195,838 - GFF2603 0.37 -1.0 196,039 - GFF2603 0.56 -0.3 196,398 + GFF2603 0.88 -1.1 196,398 + GFF2603 0.88 -0.1 196,398 + GFF2603 0.88 -0.3 196,398 - GFF2603 0.88 -0.4 196,399 - GFF2603 0.88 +1.3 196,399 - GFF2603 0.88 +0.3 196,399 - GFF2603 0.88 -0.6 196,587 - GFF2604 0.15 -0.6 196,587 - GFF2604 0.15 -0.9 196,661 + GFF2604 0.36 -0.7 196,661 + GFF2604 0.36 -1.0 196,662 - GFF2604 0.36 +0.6 196,662 - GFF2604 0.36 -0.1 196,662 - GFF2604 0.36 -0.7 196,694 + GFF2604 0.45 +0.1 196,694 + GFF2604 0.45 -0.0 196,694 + GFF2604 0.45 +0.4 196,695 - GFF2604 0.46 -1.0 196,695 - GFF2604 0.46 -1.9 196,695 - GFF2604 0.46 +0.8 196,695 - GFF2604 0.46 +0.7 196,790 + GFF2604 0.73 +0.1 196,911 + -0.4 196,912 - +0.3 196,955 + GFF2605 0.17 -1.2 196,955 + GFF2605 0.17 -0.5 196,955 + GFF2605 0.17 -0.0 196,955 + GFF2605 0.17 -0.5 196,955 + GFF2605 0.17 -0.5 196,956 - GFF2605 0.17 -0.2 196,956 - GFF2605 0.17 -1.3 196,956 - GFF2605 0.17 -1.3 196,956 - GFF2605 0.17 -0.4 196,956 - GFF2605 0.17 -1.2 196,956 - GFF2605 0.17 -0.6 196,956 - GFF2605 0.17 +0.3 196,956 - GFF2605 0.17 +0.6 196,956 - GFF2605 0.17 -0.3
Or see this region's nucleotide sequence