Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2468

Experiment: Ying_OrganicAcid7 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 1
50,221	+		GFF2466	0.58	+0.7
50,255	-		GFF2466	0.62	-2.3
50,384	+		GFF2466	0.79	-0.7
50,384	+		GFF2466	0.79	+0.0
50,512	+				-1.1
50,512	+				-0.8
50,512	+				-1.4
50,513	-				-2.1
50,513	-				-0.4
50,513	-				-0.9
50,513	-				-1.2
50,513	-				-0.4
50,610	+				+0.2
50,610	+				+0.6
50,611	-				-0.7
51,150	-				-1.0
51,150	-				-1.2
51,217	-				-0.4
51,217	-				+0.2
51,232	-		GFF2468	0.13	-0.1
51,232	-		GFF2468	0.13	+0.0
51,232	-		GFF2468	0.13	-0.2
51,232	-		GFF2468	0.13	-0.1
51,232	-		GFF2468	0.13	-0.7
51,234	+		GFF2468	0.13	-0.4
51,234	+		GFF2468	0.13	+0.1
51,234	+		GFF2468	0.13	-0.8
51,235	-		GFF2468	0.14	+0.1
51,235	-		GFF2468	0.14	-0.6
51,235	-		GFF2468	0.14	-0.1
51,235	-		GFF2468	0.14	+1.2
51,235	-		GFF2468	0.14	+0.1
51,321	+		GFF2468	0.38	-1.9
51,321	+		GFF2468	0.38	-0.1
51,322	-		GFF2468	0.39	+0.3
51,322	-		GFF2468	0.39	-0.7
51,322	-		GFF2468	0.39	-1.1
51,322	-		GFF2468	0.39	-0.4
51,331	-		GFF2468	0.41	-0.6
51,331	-		GFF2468	0.41	-0.0
51,331	-		GFF2468	0.41	-1.9
51,334	-		GFF2468	0.42	-0.0
51,397	-		GFF2468	0.60	-0.9
51,537	-				-0.2
51,726	-				-0.5
51,726	-				-0.4
51,768	+				+0.5
51,801	-				+0.6
51,801	-				+0.6
51,801	-				+0.4
51,801	-				+0.5
51,988	+				-0.4
51,988	+				-0.1
51,988	+				+0.6
51,988	+				-0.1
51,989	-				+0.1
51,989	-				-0.2
51,989	-				+1.0
51,989	-				+0.2
51,989	-				-0.6
51,989	-				+0.2
51,989	-				+0.1
51,989	-				-0.1
52,303	+		GFF2469	0.20	-0.3
52,303	+		GFF2469	0.20	-0.8
52,303	+		GFF2469	0.20	+0.3
52,304	-		GFF2469	0.20	+0.2
52,304	-		GFF2469	0.20	-1.0
52,304	-		GFF2469	0.20	-0.2
52,304	-		GFF2469	0.20	-1.0
52,304	-		GFF2469	0.20	-0.4
52,369	+		GFF2469	0.23	+0.2
52,369	+		GFF2469	0.23	-0.7
52,369	+		GFF2469	0.23	+0.0
52,370	-		GFF2469	0.23	-0.8
52,370	-		GFF2469	0.23	+0.0
52,370	-		GFF2469	0.23	-0.0
52,435	+		GFF2469	0.26	+0.1
52,435	+		GFF2469	0.26	+0.0
52,435	+		GFF2469	0.26	-1.0
52,435	+		GFF2469	0.26	-0.5
52,435	+		GFF2469	0.26	-0.7
52,435	+		GFF2469	0.26	-0.1
52,436	-		GFF2469	0.26	+1.6
52,436	-		GFF2469	0.26	-0.3
52,436	-		GFF2469	0.26	-0.7
52,436	-		GFF2469	0.26	+0.9
52,436	-		GFF2469	0.26	+0.3
52,436	-		GFF2469	0.26	-0.5
52,436	-		GFF2469	0.26	+0.2