Experiment: Ying_OrganicAcid7 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1809 and GFF1810 are separated by 4 nucleotides GFF1810 and GFF1811 are separated by 236 nucleotides GFF1811 and GFF1812 are separated by 350 nucleotides
GFF1809 - Probable transmembrane protein, at 676,613 to 677,734
GFF1809
GFF1810 - Protoporphyrinogen IX oxidase, novel form, HemJ (EC 1.3.-.-), at 677,739 to 678,167
GFF1810
GFF1811 - hypothetical protein, at 678,404 to 679,417
GFF1811
GFF1812 - Porphobilinogen synthase (EC 4.2.1.24), at 679,768 to 680,769
GFF1812
Position (kb) 678
679
680 Strain fitness (log2 ratio) -2
-1
0
1
2 at 677.433 kb on + strand, within GFF1809 at 677.433 kb on + strand, within GFF1809 at 677.433 kb on + strand, within GFF1809 at 677.434 kb on - strand, within GFF1809 at 677.556 kb on + strand, within GFF1809 at 677.557 kb on - strand, within GFF1809 at 677.557 kb on - strand, within GFF1809 at 677.595 kb on + strand, within GFF1809 at 677.595 kb on + strand, within GFF1809 at 677.596 kb on - strand, within GFF1809 at 677.596 kb on - strand, within GFF1809 at 677.596 kb on - strand, within GFF1809 at 677.596 kb on - strand, within GFF1809 at 677.664 kb on + strand at 677.664 kb on + strand at 677.665 kb on - strand at 677.665 kb on - strand at 677.665 kb on - strand at 677.665 kb on - strand at 677.676 kb on + strand at 677.676 kb on + strand at 677.676 kb on + strand at 677.676 kb on + strand at 677.676 kb on + strand at 677.676 kb on + strand at 677.677 kb on - strand at 677.677 kb on - strand at 677.677 kb on - strand at 677.677 kb on - strand at 677.677 kb on - strand at 677.677 kb on - strand at 677.677 kb on - strand at 678.178 kb on + strand at 678.178 kb on + strand at 678.178 kb on + strand at 678.178 kb on + strand at 678.179 kb on - strand at 678.179 kb on - strand at 678.179 kb on - strand at 678.179 kb on - strand at 678.179 kb on - strand at 678.179 kb on - strand at 678.263 kb on + strand at 678.263 kb on + strand at 678.263 kb on + strand at 678.263 kb on + strand at 678.263 kb on + strand at 678.263 kb on + strand at 678.264 kb on - strand at 678.264 kb on - strand at 678.264 kb on - strand at 678.264 kb on - strand at 678.326 kb on + strand at 678.327 kb on - strand at 678.376 kb on + strand at 678.376 kb on + strand at 678.376 kb on + strand at 678.376 kb on + strand at 678.376 kb on + strand at 678.376 kb on + strand at 678.376 kb on + strand at 678.377 kb on - strand at 678.377 kb on - strand at 678.377 kb on - strand at 678.377 kb on - strand at 678.377 kb on - strand at 678.377 kb on - strand at 678.395 kb on + strand at 678.395 kb on + strand at 678.396 kb on - strand at 678.396 kb on - strand at 678.396 kb on - strand at 678.396 kb on - strand at 678.405 kb on + strand at 678.405 kb on + strand at 678.405 kb on + strand at 678.405 kb on + strand at 678.405 kb on + strand at 678.405 kb on + strand at 678.406 kb on - strand at 678.406 kb on - strand at 678.406 kb on - strand at 678.406 kb on - strand at 678.623 kb on - strand, within GFF1811 at 678.759 kb on + strand, within GFF1811 at 678.759 kb on + strand, within GFF1811 at 678.759 kb on + strand, within GFF1811 at 678.759 kb on + strand, within GFF1811 at 678.760 kb on - strand, within GFF1811 at 678.760 kb on - strand, within GFF1811 at 678.760 kb on - strand, within GFF1811 at 678.760 kb on - strand, within GFF1811 at 678.760 kb on - strand, within GFF1811 at 678.760 kb on - strand, within GFF1811 at 678.760 kb on - strand, within GFF1811 at 679.099 kb on + strand, within GFF1811 at 679.099 kb on + strand, within GFF1811 at 679.099 kb on + strand, within GFF1811 at 679.100 kb on - strand, within GFF1811 at 679.100 kb on - strand, within GFF1811 at 679.100 kb on - strand, within GFF1811 at 679.257 kb on + strand, within GFF1811 at 679.257 kb on + strand, within GFF1811 at 679.257 kb on + strand, within GFF1811 at 679.257 kb on + strand, within GFF1811 at 679.257 kb on + strand, within GFF1811 at 679.257 kb on + strand, within GFF1811 at 679.257 kb on + strand, within GFF1811 at 679.257 kb on + strand, within GFF1811 at 679.258 kb on - strand, within GFF1811 at 679.258 kb on - strand, within GFF1811 at 679.258 kb on - strand, within GFF1811 at 679.258 kb on - strand, within GFF1811 at 679.258 kb on - strand, within GFF1811 at 679.258 kb on - strand, within GFF1811 at 679.258 kb on - strand, within GFF1811 at 679.258 kb on - strand, within GFF1811 at 679.316 kb on - strand at 679.569 kb on - strand at 679.592 kb on + strand at 679.592 kb on + strand at 679.592 kb on + strand at 679.592 kb on + strand at 679.592 kb on + strand at 679.592 kb on + strand at 679.592 kb on + strand at 679.593 kb on - strand at 679.593 kb on - strand at 679.593 kb on - strand at 679.593 kb on - strand at 679.633 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 1 remove 677,433 + GFF1809 0.73 -0.5 677,433 + GFF1809 0.73 -1.6 677,433 + GFF1809 0.73 -0.8 677,434 - GFF1809 0.73 -0.3 677,556 + GFF1809 0.84 -0.2 677,557 - GFF1809 0.84 +0.5 677,557 - GFF1809 0.84 -1.5 677,595 + GFF1809 0.88 -0.5 677,595 + GFF1809 0.88 -0.5 677,596 - GFF1809 0.88 +0.7 677,596 - GFF1809 0.88 +0.5 677,596 - GFF1809 0.88 +0.2 677,596 - GFF1809 0.88 -0.3 677,664 + +0.7 677,664 + -0.0 677,665 - +0.0 677,665 - -0.8 677,665 - -0.4 677,665 - -0.3 677,676 + +0.1 677,676 + -0.4 677,676 + +0.9 677,676 + -0.3 677,676 + +0.2 677,676 + -0.1 677,677 - +0.2 677,677 - -0.3 677,677 - +1.1 677,677 - -0.8 677,677 - -0.0 677,677 - -1.1 677,677 - -0.1 678,178 + +0.0 678,178 + -0.2 678,178 + -0.4 678,178 + -0.2 678,179 - -0.0 678,179 - +1.0 678,179 - +0.5 678,179 - +0.2 678,179 - -0.0 678,179 - -0.6 678,263 + -0.2 678,263 + -0.0 678,263 + -0.1 678,263 + -0.2 678,263 + -0.6 678,263 + -0.1 678,264 - +0.4 678,264 - -0.1 678,264 - -1.0 678,264 - +1.0 678,326 + +1.8 678,327 - +1.0 678,376 + +0.5 678,376 + +0.0 678,376 + -0.8 678,376 + -0.8 678,376 + -0.5 678,376 + -0.8 678,376 + -0.7 678,377 - -0.4 678,377 - +0.5 678,377 - -0.2 678,377 - -0.8 678,377 - +0.2 678,377 - -0.3 678,395 + -0.5 678,395 + +0.2 678,396 - +0.1 678,396 - -1.1 678,396 - +0.7 678,396 - -0.2 678,405 + +0.2 678,405 + +0.8 678,405 + +0.2 678,405 + +1.2 678,405 + +0.1 678,405 + -0.3 678,406 - -0.3 678,406 - -0.2 678,406 - -0.0 678,406 - +1.5 678,623 - GFF1811 0.22 -0.5 678,759 + GFF1811 0.35 +0.1 678,759 + GFF1811 0.35 -0.3 678,759 + GFF1811 0.35 +0.7 678,759 + GFF1811 0.35 +1.1 678,760 - GFF1811 0.35 -1.6 678,760 - GFF1811 0.35 -0.6 678,760 - GFF1811 0.35 +0.2 678,760 - GFF1811 0.35 +0.5 678,760 - GFF1811 0.35 +0.1 678,760 - GFF1811 0.35 -0.6 678,760 - GFF1811 0.35 -1.7 679,099 + GFF1811 0.69 +1.0 679,099 + GFF1811 0.69 -0.5 679,099 + GFF1811 0.69 +0.5 679,100 - GFF1811 0.69 +0.2 679,100 - GFF1811 0.69 +0.3 679,100 - GFF1811 0.69 -0.3 679,257 + GFF1811 0.84 +0.3 679,257 + GFF1811 0.84 +0.6 679,257 + GFF1811 0.84 +0.2 679,257 + GFF1811 0.84 +0.4 679,257 + GFF1811 0.84 +0.8 679,257 + GFF1811 0.84 +0.2 679,257 + GFF1811 0.84 +0.5 679,257 + GFF1811 0.84 +1.1 679,258 - GFF1811 0.84 -0.7 679,258 - GFF1811 0.84 -1.9 679,258 - GFF1811 0.84 -0.6 679,258 - GFF1811 0.84 -0.0 679,258 - GFF1811 0.84 -0.1 679,258 - GFF1811 0.84 +0.1 679,258 - GFF1811 0.84 +0.5 679,258 - GFF1811 0.84 +0.2 679,316 - +1.1 679,569 - -2.0 679,592 + -1.6 679,592 + -0.7 679,592 + -0.3 679,592 + +0.1 679,592 + +0.0 679,592 + -0.3 679,592 + +0.5 679,593 - +0.4 679,593 - -0.1 679,593 - -2.0 679,593 - +0.0 679,633 - -0.5
Or see this region's nucleotide sequence